> 3Matrix

3MatrixTool Content

http://motif.stanford.edu/distributions/3matrix/

Protein > 3-D Structure Retrieval/Viewing
Protein > Domains and Motifs

3Matrix is a tool for visualizing protein sequence motifs and their properties in 3 dimensions. This tool needs to be downloaded and run locally on your own machine.

This content is being maintained by brutlag.

NAR Web Server Issue 2003
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tagsamino acid motifs amino acids animals conserved sequence molecular models protein conformation protein databases proteins sequence alignment

Documentation

To install the 3matrix package, perform the following steps:

1. From this web page, download '3matrix-1.0.tar.gz'

2. In a convenient location, uncompress and unpack the software by
typing:
gunzip 3matrix-1.0.tar.gz
tar -xvf 3matrix-1.0.tar

This creates a directory ./3matrix-1.0 containing the distribution
files.

3. Change directories into the 3matrix-1.0 directory that was just
created.

4. Open and carefully read the README file there for instructions.

** NOTE: You will probably need to download the pdb-xx-20xx.tar file
as well - the README file will give you the necessary details.

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To cite this work, use the following reference:

Steven P. Bennett, Lin Lu, and Douglas L. Brutlag,
"3matrix and 3motif: A Protein Structure Visualization System for Conserved Sequence Motifs."
In press, Nucleic Acids Research.

Please send questions and comments to one of the following people:
Steven P. Bennett (encino@stanford.edu) if before 06/2003
Douglas L. Brutlag (http://cmgm.stanford.edu/~brutlag) if after 06/2003

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