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DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation
RNA > Motifs

Tools for Motif Discovery (MoD) in nucleotide sequences that includes: Weeder, a program for detecting transcription factor binding sites (TFBS) in coregulated genes; WeederH, a tool for detecting TFBS and regulatory regions from homologous genes; and RNA profile, a tool for secondary structure motif discovery in RNA sequences.

NAR Web Server Issue 2006
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tagsbinding sites dna sequence analysis gene expression regulation nucleic acid conformation nucleic acid sequence homology ribonucleic acid regulatory sequences rna sequence analysis transcription factors transcriptional regulatory elements untranslated rna

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