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Links tagged with 'x-ray diffraction'

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AquaSAXSTool Content

http://lorentz.dynstr.pasteur.fr/aquasaxs.php

Protein > 3-D Structure Prediction

AquaSAXS is a web server for computation of and fitting of small angle x-ray scattering (SAXS) profiles with non-uniformally hydrated atomic models.

NAR Web Server Issue 2011
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tagsmolecular models protein conformation small angle scattering x-ray diffraction

FoXSTool Content

http://salilab.org/foxs

Protein > 3-D Structure Prediction

Fast X-ray Scattering (FoXS) is a web server for computing the small angle x-ray scattering (SAXS) structure profile of a molecule in solution and for comparing the computed profile to the experimental profile.

NAR Web Server Issue 2010
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tagssmall angle scattering x-ray diffraction

ModBaseDatabase Content

http://salilab.org/modbase

Protein > Databases

ModBase is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that relies primarily on Modeller for fold assignment, sequence-structure alignment, model building and model assessment. ModBase allows users to update comparative models on demand, and request modeling of additional sequences through an interface to the ModWeb modeling server. Recently developed associated resources include the SALIGN server for multiple sequence and structure alignment, the ModEval server for predicting the accuracy of protein structure models, the PCSS server for predicting which peptides bind to a given protein and the FoXS server for calculating and fitting Small Angle X-ray Scattering profiles.

NAR Database Issue 2011
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tagsbacterial proteins molecular models peptides protein databases protein interaction mapping protein structural homology proteins sequence alignment small angle scattering tertiary protein structure x-ray diffraction

NOMAD-RefTool Content

http://lorentz.immstr.pasteur.fr/nomad-ref.php

Protein > Molecular Dynamics and Docking

Normal Mode Analysis, Deformation, and Refinement (NOMAD-Ref) provides tools for calculating functionally relevant movements in biological macromolecules. This resource provides tools for investigating different conformations of large protein structures, for modeling receptor/ligand docking complexes, and for calculating the associated molecular motions.

NAR Web Server Issue 2006
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tagscarrier proteins computer simulation dna dna-binding proteins dna-directed dna polymerase dna-directed rna polymerases escherichia coli proteins ligands macromolecular substances mathematical computing molecular models molecular structure motion neural networks (computer) protein conformation proteins x-ray diffraction