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Links tagged with 'trans-activators'

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BSQATool Content

http://www.beespace.uiuc.edu/QuestionAnswer

Literature > Text Mining and Semantics
Model Organisms > Fly

BeeSpace Question/Answering (BSQA) system is a web server that performs integrated text mining for insect biology, covering diverse aspects from molecular interactions of genes to insect behavior. BSQA recognizes a number of entities and relations in Medline documents about the model insect, Drosophila melanogaster.

NAR Web Server Issue 2010
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tagsanimal behavior animals data mining drosophila melanogaster gene expression regulation homeodomain proteins insect genes insects systems integration trans-activators

MulanTool Content

http://mulan.dcode.org/

Sequence Comparison > Multiple Sequence Alignments

Mulan is a multiple sequence alignment tool. It employs novel algorithms such as TBA and multiTF to respectively perform alignments and discover transcription factor binding sites. Results can be viewed as dot-plots of individual sequence alignments, or dynamically browsed with the ability to zoom in from sequence conservation profiles down to the level of the individual characters of the sequence alignment.

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tagsanimals anura binding sites chickens computational biology conserved sequence dna-binding proteins fishes gata3 transcription factor genome human genome humans mice molecular evolution nucleic acid sequence homology phylogeny rats sequence alignment trans-activators

NetPhosTool Content

http://www.cbs.dtu.dk/services/NetPhos/

Protein > Sequence Features

NetPhos is a neural network-based method for predicting potential phosphorylation sites at serine, threonine or tyrosine residues in protein sequences

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tagsamino acid motifs amino acid sequence animals binding sites consensus sequence eukaryotic cells glycosylation molecular models neural networks (computer) nuclear proteins phosphoproteins phosphorylation phylogeny reproducibility of results sensitivity and specificity serine substrate specificity tertiary protein structure threonine trans-activators tyrosine

taveRNATool Content

http://compbio.cs.sfu.ca/taverna/

RNA > Functional RNAs
RNA > Structure Prediction, Visualization, and Design

taveRNA hosts three RNA web services: alteRNA, inteRNA and pRuNA. alteRNA is an alternative to many RNA folding methods. inteRNA predicts the joint secondary structure of two RNA sequences. pRuNA is an database pruning method which given a query RNA returns only a few ncRNAs as potential regulators.

NAR Web Server Issue 2007
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tagsadenosine triphosphatases algorithms antisense rna bacterial genome bacterial rna base sequence binding sites cation transport proteins chemical models computational biology computer simulation escherichia coli escherichia coli proteins humans molecular sequence data nucleic acid conformation plasmids programming languages rna rna sequence analysis rna stability sequence alignment statistical models trans-activators