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Links tagged with 'tissue distribution'

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ASePCRTool Content

http://genome.ewha.ac.kr/ASePCR/

DNA > Tools For the Bench
Expression > Splicing

ASePCR (Alternative Splicing electronic PCR) is a tool for carrying out e-PCR to detect differences in amplicon sizes in transcripts from different tissues and organs.

NAR Web Server Issue 2005
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tagsalgorithms alternative splicing animals base sequence expressed sequence tags humans messenger rna mice molecular sequence data rats reverse transcriptase polymerase chain reaction tissue distribution

BIOBASE Gene Regulation databasesDatabase Content

http://www.gene-regulation.com/pub/databases.html

Protein > Interactions, Pathways, Enzymes

includes: TRANSFAC - transcription factor database; Patho DB - mutated forms of transcription factors and binding sites that are pathologically relevant; S/MARt DB - scaffold matrix transaction database; TRANSPATH - gene regulatory pathway database.

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tagsanimals binding sites chromatin chromosomes database management systems developmental gene expression regulation dna-binding proteins eukaryotic cells forecasting gene expression profiling gene expression regulation genetic databases genetic promoter regions genetic transcription humans macromolecular substances mice nuclear matrix nuclear proteins nucleic acid databases oligonucleotide array sequence analysis protein databases saccharomyces signal transduction systems integration tissue distribution transcription factors

Laminin databaseDatabase Content

http://www.lm.lncc.br

Protein > Databases

The Laminin(LM)-database is a database focusing on the non-collagenous extracellular matrix protein family, the LMs. The homepage is subdivided into LMs, receptors, extracellular binding and other related proteins. Each tab opens into a given LM or LM-related molecule, where the reader finds a series of further tabs for 'protein', 'gene structure', 'gene expression' and 'tissue distribution' and 'therapy'. Data are separated as a function of species, comprising Homo sapiens, Mus musculus and Rattus novergicus.

NAR Database Issue 2011
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tagsanimals gene expression humans laminin mice protein databases pubmed rats tissue distribution

MITOPREDTool Content

http://bioinformatics.albany.edu/~mitopred/

Protein > Annotation and Function

MITOPRED uses Pfam domains, pI values and amino acid composition to predict nuclear-encoded mitochondrial proteins. Predictions have been precomputed for a number of proteomes, as well as for all Eukaryotic sequences in Swiss-Prot and TrEMBL. Users may directly enter or upload a file with a list of protein sequences or Swiss-Prot/TrEMBL accession numbers.

NAR Web Server Issue 2004
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tagsalgorithms animals cell nucleus gene expression profiling genome humans mitochondrial proteins protein databases protein sequence analysis proteome reproducibility of results sensitivity and specificity sequence alignment software design tertiary protein structure tissue distribution

PA-SUBTool Content

http://www.cs.ualberta.ca/~bioinfo/PA/Sub/

Protein > Localization and Targeting

PA-SUB (Proteome Analyst Specialized Subcellular Localization Server) can be used to predict the subcellular localization of proteins using established machine learning techniques.

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tagsalgorithms amino acid sequence homology artificial intelligence automated pattern recognition cellular structures cluster analysis natural language processing protein databases protein sequence analysis proteins proteome proteomics reproducibility of results sequence alignment tissue distribution

TRANSFACDatabase Content

http://www.gene-regulation.com/pub/databases.html#transfac

DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation

Transcription Factor Database of eukaryotic cis-acting regulatory DNA elements and trans-acting factors; free for non-commercial use.

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tagsanimals arabidopsis arabidopsis proteins binding sites database management systems developmental gene expression regulation dna dna-binding proteins drosophila melanogaster drosophila proteins eukaryotic cells factual databases gene expression profiling gene expression regulation genetic databases genetic promoter regions genetic transcription humans mice nucleic acid regulatory sequences rats saccharomyces systems integration tertiary protein structure tissue distribution transcription factors

WebGestaltTool Content

http://bioinfo.vanderbilt.edu/webgestalt/

DNA > Annotations
Expression > Transcript Expression Analysis
Protein > Annotation and Function
Protein > Domains and Motifs
Protein > Interactions, Pathways, Enzymes

WebGestalt (WEB-based GEne SeT AnaLysis Toolkit) is a system facilitating the analysis of sets of genes. Gene sets can be compared using set operations (intersection, union, etc.), different annotations can be selected and retrieved for the set, and sets can be visualized and organized by a user-selected method (Gene Ontology, chromosomal distribution, etc.). WebGestalt can also perform a statistical analysis to suggest areas of interest with respect to the set of genes selected.

This content is being maintained by bzhang.

NAR Web Server Issue 2005
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tagsgene expression genes genetic databases genomics humans proteomics statistical data interpretation systems integration tissue distribution