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Links tagged with 'text mining'

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ACELATool Content

http://www.nactem.ac.uk/acela/

Literature > Text Mining and Semantics

The ACELA (ACcElerated Annotation) tool aims to reduce the human effort required to produce a gold standard corpus of named entity (NE) annotations.

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tagsaccelerated annotation algorithms annotation tool artificial intelligence automated pattern recognition bibliographic databases named entity annotation natural language processing terminology as topic text mining
setsUniversity of Manchester

DECATool Content

http://www.nactem.ac.uk/deca_details/start.cgi

Literature > Text Mining and Semantics

DECA is a species disambiguation system for biological named entities. The system will identify protein entities and disambiguate them according to species, by assigning NCBI Taxonomy organism IDs.

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tagsartificial intelligence data mining factual databases named entity recognition natural language processing species disambiguation species specificity terminology as topic text mining

FACTA+Tool Content

http://refine1-nactem.mc.man.ac.uk/facta/

Literature > Text Mining and Semantics

FACTA+ (Finding Associated Concepts with Text Analysis) is a real-time text-mining system for finding and visualizing indirect associations between biomedical concepts from MEDLINE abstracts. The system can be used as a text search engine like PubMed, with additional features to help users to discover and visualize indirect associations between important biomedical concepts such as genes, diseases and chemical compounds.

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tagsdatabase management systems medline term association discovery text mining

GénieTool Content

http://cbdm.mdc-berlin.de/tools/genie/

Literature > Text Mining and Semantics

Genie evaluates the literature attached to all genes in a genome and to their orthologs for a selected topic. Hundreds of species and millions of genes are supported. Running times range from a few seconds to a minute in most of the cases.

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NAR Web Server Issue 2011
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tagsalgorithms animal models animals data mining gene expression profiling gene prioritization genes genomics heart humans medline mice orthology relationships text mining zebrafish

MedlineRankerTool Content

http://cbdm.mdc-berlin.de/tools/medlineranker

Literature > Text Mining and Semantics

The MedlineRanker web server allows a flexible and fast ranking of Medline abstracts for a topic of interest without expert knowledge.

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NAR Web Server Issue 2009
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tagsbayesian classifier document retrieval medline text mining

Yeast MetaboliNERTool Content

http://nactem-t1.mib.man.ac.uk/metaboliner/

Literature > Text Mining and Semantics
Model Organisms > Yeast
Other Molecules > Metabolites

Yeast MetaboliNER is a tool to automatically identify metabolite names in the literature, and associate structures where possible, to define the reported yeast metabolome.

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tagsmetabolites named entity recognition text mining yeast