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Links tagged with 'surface properties'

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3dLOGOTool Content

http://3dlogo.uniroma2.it/3dLOGO/home.html

Protein > 3-D Structural Features
Protein > 3-D Structure Comparison
Protein > Domains and Motifs

3dLOGO is a server for the identification and analysis of conserved protein three-dimensional (3D) substructures.

NAR Web Server Issue 2007
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tagsalgorithms amino acid motifs amino acid sequence animals automation binding sites computational biology computer simulation conserved sequence factual databases false negative reactions humans molecular models molecular structure programming languages protein conformation protein databases protein folding protein sequence analysis protein structural homology proteins sensitivity and specificity sequence alignment src homology domains statistical models surface properties

PFPTool Content

http://pfp.technion.ac.il/

Protein > 3-D Structural Features
Protein > Interactions, Pathways, Enzymes

PFP (Patch Finder Plus) is a tool for extracting and displaying positive electrostatic patches on protein surfaces which can be indicative of nucleic acid binding interfaces.

This content is being maintained by shulash3.

NAR Web Server Issue 2007
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tagsalgorithms amino acid motifs amino acid sequence binding sites computational biology dna-binding proteins hydrogen bonding hydrogen-ion concentration molecular conformation molecular models molecular sequence data neural networks (computer) plant proteins programming languages protein binding protein conformation protein databases proteins static electricity surface properties viral proteins

PredUsTool Content

http://wiki.c2b2.columbia.edu/honiglab_public/index.php/Software:PredUs

Protein > Interactions, Pathways, Enzymes

PredUs is a web server for the prediction of protein-protein interfaces. The method predicts protein-protein interfaces of a given monomeric query protein using its close and remote structural neighbors.

This content is being maintained by cliffzhang.

NAR Web Server Issue 2011
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tagsalgorithms artificial intelligence binding sites computational biology conserved sequence molecular models multiprotein complexes protein binding protein conformation protein databases protein interaction domains and motifs protein interaction mapping protein structural homology proteins sequence alignment surface properties systems biology

ProMateusTool Content

http://bioportal.weizmann.ac.il/promate/

Protein > 3-D Structural Features
Protein > Interactions, Pathways, Enzymes

ProMateus extends ProMate, a protein binding site predictor, and allows the user to suggest new features that might improve the prediction of the binding site locations.

NAR Web Server Issue 2007
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tagsalgorithms binding sites computational biology dna factual databases molecular models protein binding protein conformation proteins secondary protein structure surface properties