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Links tagged with 'stem cells'

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CHAOS/DIALIGN WWW serverTool Content

http://dialign.gobics.de/chaos-dialign-submission

Sequence Comparison > Alignment Editing and Visualization
Sequence Comparison > Multiple Sequence Alignments

The CHAOS/DIALIGN WWW server is a multiple sequence alignment site which passes input sequences through CHAOS to create a list of local similarites. These similarities serve as anchor points, allowing DIALIGN to conduct global alignments faster. ABC can then be used for the interactive visualization of the alignment.

NAR Web Server Issue 2004NAR Web Server Issue 2005
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tagsalgorithms animals chickens computational biology dna sequence analysis genome genomics humans leukemia mice neoplasm dna neoplasm genes nucleic acid regulatory sequences rats sensitivity and specificity sequence alignment software validation stem cells tetraodontiformes zebrafish

DIALIGNTool Content

http://bibiserv.techfak.uni-bielefeld.de/dialign/

Sequence Comparison > Multiple Sequence Alignments

Multiple alignment program which assembles a global sequence alignment from gap-free local pairwise alignments. This method could be especially useful when comparing large sequences that have only local similarities.

NAR Web Server Issue 2004
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tagsalgorithms amino acid sequence amino acid sequence homology animals chickens computational biology dna sequence analysis genome humans leukemia mice molecular sequence data neoplasm dna neoplasm genes nucleic acid regulatory sequences protein sequence analysis proteins rats sensitivity and specificity sequence alignment software validation stem cells tetraodontiformes zebrafish

GeneSigDBDatabase Content

http://compbio.dfci.harvard.edu/genesigdb

Expression > Databases

GeneSigDB is a manually curated database of gene expression signatures. GeneSigDB focuses on cancer, development, and stem cell gene signatures and was constructed from thousands of publications from which we manually transcribe gene signatures. Gene signatures are mapped to the genome to extract standardized lists of EnsEMBL gene identifiers. GeneSigDB provides the original gene signature, the standardized gene list and a fully traceable gene mapping history for each gene from the original transcribed data table through to the standardized list of genes. GeneSigDB release 3.0 (Decemeber 2010) contained over 2,000 gene signatures.

NAR Database Issue 2010
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tagsalgorithms computational biology gene expression profiling genetic databases humans neoplasms neoplastic gene expression regulation nucleic acid databases oligonucleotide array sequence analysis protein databases stem cells

SCLDDatabase Content

http://scld.mcb.uconn.edu

Human Genome > Databases
Model Organisms > Databases

The Stem Cell Lineage Database (SCLD) user-editable lineage maps illustrating both endogenous development and the directed differentiation of human and mouse embryonic stem cells.

This content is being maintained by eeh04001.

NAR Database Issue 2011
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tagsanimals cell differentiation cell lineage factual databases gene expression humans mesoderm mice stem cells