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Links tagged with 'software validation'

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ASPicTool Content

http://t.caspur.it/ASPIC/

Expression > Splicing
Expression > cDNA, EST, SAGE
Sequence Comparison > Other Alignment Tools

Alternative Splicing Prediction (ASPic) can predict alternative splicing of user submitted genes based on comparative analysis of available transcript and genome data from a variety of species. Results include graphical and tabular views of the splicing patterns of full-length mRNA isoforms compatible with the detected splice sites of the genes as well as structural and functional annotations.

NAR Web Server Issue 2006
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tagsalgorithms alternative splicing animals base sequence benchmarking exons gene expression profiling genomics heterogeneous-nuclear ribonucleoproteins humans introns messenger rna molecular computers molecular models protein isoforms rna splice sites sequence alignment software design software validation

CHAOS/DIALIGN WWW serverTool Content

http://dialign.gobics.de/chaos-dialign-submission

Sequence Comparison > Alignment Editing and Visualization
Sequence Comparison > Multiple Sequence Alignments

The CHAOS/DIALIGN WWW server is a multiple sequence alignment site which passes input sequences through CHAOS to create a list of local similarites. These similarities serve as anchor points, allowing DIALIGN to conduct global alignments faster. ABC can then be used for the interactive visualization of the alignment.

NAR Web Server Issue 2004NAR Web Server Issue 2005
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tagsalgorithms animals chickens computational biology dna sequence analysis genome genomics humans leukemia mice neoplasm dna neoplasm genes nucleic acid regulatory sequences rats sensitivity and specificity sequence alignment software validation stem cells tetraodontiformes zebrafish

ChinookTool Content

http://www.bcgsc.bc.ca/chinook/

Computer Related > Web Services
DNA > DNA and Genomic Analysis
DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation
Sequence Comparison > Multiple Sequence Alignments
Sequence Comparison > Pairwise Sequence Alignments

Chinook is a peer-to-peer (P2P) service for the discovery, use and assessment of bioinformatics programs. Chinook Online allows researchers to connect and run distributed bioinformatics programs using a web application.

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tagsbenchmarking biomedical technology assessment computational biology computing methodologies software validation

DIALIGNTool Content

http://bibiserv.techfak.uni-bielefeld.de/dialign/

Sequence Comparison > Multiple Sequence Alignments

Multiple alignment program which assembles a global sequence alignment from gap-free local pairwise alignments. This method could be especially useful when comparing large sequences that have only local similarities.

NAR Web Server Issue 2004
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tagsalgorithms amino acid sequence amino acid sequence homology animals chickens computational biology dna sequence analysis genome humans leukemia mice molecular sequence data neoplasm dna neoplasm genes nucleic acid regulatory sequences protein sequence analysis proteins rats sensitivity and specificity sequence alignment software validation stem cells tetraodontiformes zebrafish

Orthologue Search ServiceTool Content

http://dove.embl-heidelberg.de/Blast2e/

DNA > Phylogeny Reconstruction
Protein > Phylogeny Reconstruction

BLAST a protein sequence then perform automated phylogenetic analysis to detect orthologous sequences.

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tagscomputational biology dna sequence analysis factual databases molecular evolution nucleic acid sequence homology phylogeny sequence alignment software validation

VectorNTITool Content

http://www.invitrogen.com/site/us/en/home/LINNEA-Online-Guides/LINNEA-Communitie...

DNA > Tools For the Bench

VectorNTI is an application for integrated for molecular sequence analysis including primer design, virtual cloning, alignments, and sequence assembly. The free license needs to be renewed every year.

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tagsalgorithms artificial intelligence chromosome mapping database management systems genetic databases sequence alignment sequence analysis software validation