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Links tagged with 'single-stranded dna'

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DINAMeltTool Content

http://mfold.rna.albany.edu/?q=DINAMelt

DNA > Tools For the Bench
RNA > Structure Prediction, Visualization, and Design

DINAMelt is a tool for predicting hybridization and folding (secondary structure) of DNA and RNA using equilibrium thermodynamic methods.

NAR Web Server Issue 2005
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tagsalgorithms animals bacterial rna base sequence calorimetry dna dna sequence analysis fungal rna genetic hybridization introns molecular sequence data nucleic acid conformation nucleic acid denaturation nucleic acid hybridization oligonucleotides oligoribonucleotides phylogeny rats rna rna sequence analysis single-stranded dna structure-activity relationship temperature theoretical models transition temperature

MfoldTool Content

http://mfold.rna.albany.edu/?q=mfold/download-mfold

RNA > Structure Prediction, Visualization, and Design

Predict RNA secondary structure from sequence; does not predict pseudoknots - see PKNOTS.

NAR Web Server Issue 2003
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tagsbase composition base sequence consensus sequence dna molecular models molecular sequence data nucleic acid conformation nucleic acid databases nucleic acid denaturation nucleic acid hybridization nucleic acid repetitive sequences rna single-stranded dna thermodynamics

One-Block CYRCATool Content

http://bioinformatics.weizmann.ac.il/~milana/OneCYRCA/

Protein > Domains and Motifs
Sequence Comparison > Analysis of Aligned Sequences

One-Block CYRCA is a program for identifying blocks (local ungapped profiles of the most conserved regions of protein families and domains) in a multiple sequence alignment based on the LAMA and CYRCA block-to-block alignment methods.

NAR Web Server Issue 2005
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tagsadenosine triphosphatases algorithms amino acid motifs amino acid sequence amino acid sequence homology aspartylglucosylaminase automation binding sites catalysis computational biology conserved sequence dna nucleotidyltransferases dna-binding proteins endopeptidase clp enoyl-coa hydratase factual databases flavin-adenine dinucleotide gamma-glutamyltransferase helix-turn-helix motifs hydrolysis ligands molecular models protein binding protein databases protein folding protein sequence analysis proteins sequence alignment serine endopeptidases single-stranded dna structure-activity relationship tertiary protein structure transposases