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Links tagged with 'serine endopeptidases'

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iCRTool Content

http://210.212.215.199/icr/index.html

DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation
Protein > Interactions, Pathways, Enzymes

Identify Conserved targets of a Regulon (iCR) predicts regulatory binding sites based on conservation across multiple species. The user provides an ungapped multiple sequence alignment representing the regulatory binding site. iCR reports back with predicted binding sites that are conserved and highlights the downstream co-regulated genes.

NAR Web Server Issue 2006
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tags5' flanking region bacterial genome bacterial proteins binding sites dna-binding proteins genomics mycobacterium tuberculosis nucleic acid regulatory sequences operon prokaryotic cells regulon sequence alignment serine endopeptidases transcription factors transcriptional regulatory elements

One-Block CYRCATool Content

http://bioinformatics.weizmann.ac.il/~milana/OneCYRCA/

Protein > Domains and Motifs
Sequence Comparison > Analysis of Aligned Sequences

One-Block CYRCA is a program for identifying blocks (local ungapped profiles of the most conserved regions of protein families and domains) in a multiple sequence alignment based on the LAMA and CYRCA block-to-block alignment methods.

NAR Web Server Issue 2005
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tagsadenosine triphosphatases algorithms amino acid motifs amino acid sequence amino acid sequence homology aspartylglucosylaminase automation binding sites catalysis computational biology conserved sequence dna nucleotidyltransferases dna-binding proteins endopeptidase clp enoyl-coa hydratase factual databases flavin-adenine dinucleotide gamma-glutamyltransferase helix-turn-helix motifs hydrolysis ligands molecular models protein binding protein databases protein folding protein sequence analysis proteins sequence alignment serine endopeptidases single-stranded dna structure-activity relationship tertiary protein structure transposases

PredictRegulonTool Content

http://www.cdfd.org.in/predictregulon/

DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation

PredictRegulon is a tool that, for a given regulatory protein and prokaryotic genome, predicts binding sites and operons. The user selects a prokaryote genome and provides an ungapped multiple sequence alignment representing the binding site. PredictRegulon reports back with predicted binding sites and downstream co-regulated genes.

NAR Web Server Issue 2004
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tags5' flanking region bacterial genome bacterial proteins binding sites mycobacterium tuberculosis nucleic acid regulatory sequences operon prokaryotic cells regulon sequence alignment serine endopeptidases transcription factors