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Links tagged with 'roc curve'

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ENDEAVOURTool Content

http://www.esat.kuleuven.be/endeavour

Expression > Networks
Expression > Protein Expression
Expression > Transcript Expression Analysis
Expression > cDNA, EST, SAGE

ENDEAVOUR is a computational approach to prioritize candidate genes for further study. Users input training genes already known to be involved in the process under study and the candidate genes to prioritize. The web server supports multiple species and integrates multiple genomic data to generate the final prioritization. ENDEAVOUR has been benchmarked in silico and experimentally validated leading to the discovery of novel disease genes in several genetic diseases.

This content is being maintained by ltranche.

NAR Web Server Issue 2008
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tagsalgorithms animal models animals caenorhabditis elegans cell differentiation chromosome mapping computational biology drosophila melanogaster gene expression regulation genes genetic models genetic predisposition to disease humans mice rats roc curve sensitivity and specificity statistical models zebrafish

Kalign, Kalignvu, and MumsaTool Content

http://msa.cgb.ki.se/cgi-bin/msa.cgi

Sequence Comparison > Alignment Editing and Visualization
Sequence Comparison > Analysis of Aligned Sequences
Sequence Comparison > Multiple Sequence Alignments

Kalign is a fast and accurate multiple sequence alignment algorithm designed to align large numbers of protein sequences. Kalignvu is an xml based alignment viewer that allows users to resize alignments and choose different colour schemes. Mumsa is a tool for automatic assessment of alignment quality.

NAR Web Server Issue 2006
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tagsalgorithms dna sequence analysis genome genomics nucleic acid databases protein databases protein sequence analysis reproducibility of results roc curve sequence alignment

Pcons.netTool Content

http://pcons.net/

Protein > 2-D Structure Prediction
Protein > 3-D Structure Prediction
Protein > Domains and Motifs
Sequence Comparison > Similarity Searching

Pcons.net is a protein structure prediction meta server that provides automated tools for protein structure prediction and analysis using a consensus approach.

NAR Web Server Issue 2007
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tagsalgorithms amino acid sequence animals automatic data processing automation computational biology computer simulation consensus sequence humans molecular models molecular sequence data neural networks (computer) protein conformation protein databases protein folding protein sequence analysis protein structural homology proteins roc curve secondary protein structure sensitivity and specificity sequence alignment statistical models tertiary protein structure

ProCKSITool Content

http://www.procksi.net/

Protein > 3-D Structure Comparison
Protein > 3-D Structure Retrieval/Viewing

ProCKSi (Protein Structure Comparison, Knowledge, Similarity and Information) is a multi-layer protein comparison meta-server that computes structure similarities using various information theory measures. ProCKSI integrates various protein similarity measures through an easy to use interface that allows the comparison of multiple proteins simultaneously. Based on a diverse set of similarity measures, ProCKSI computes a consensus similarity profile for the entire protein set. All results can be clustered, visualised, analysed

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tagsalgorithms amino acid motifs amino acid sequence amino acid sequence homology animals automated pattern recognition cluster analysis computational biology computer simulation expert systems factual databases humans molecular models molecular sequence data protein conformation protein databases protein sequence analysis protein structural homology proteins reproducibility of results roc curve sensitivity and specificity sequence alignment

ProspectrTool Content

http://www.genetics.med.ed.ac.uk/prospectr/

Human Genome > Health and Disease

Prospectr (PRiOrization by Sequence & Phylogenetic Extent of CandidaTe Regions) can be used to enrich lists of genes found at a suspected disease locus. Given a list of genes, Prospectr will return a ranked list ordered by the likelihood of involvement in disease.

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tagsalgorithms automation computational biology conserved sequence decision trees dna sequence analysis gene expression profiling genetic databases genetic linkage genetic models genetic polymorphism genetic predisposition to disease genetic testing genome human genome humans inborn genetic diseases linkage disequilibrium nucleic acid databases phenotype protein databases reproducibility of results research design roc curve statistical models time factors