Links tagged with 'retroviridae proteins'

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3D-pssm

http://www.sbg.bio.ic.ac.uk/~3dpssm/index2.html

Protein > 3-D Structure Prediction

Protein fold recognition using 1d and 3d sequence profiles coupled with secondary structure and solvation potential information.

Gypsy Database of Mobile Genetic Elements (GyDB)is a database of viruses and transposable elements based on their phylogenetic classification (per lineage and protein domain). GyDB now includes long terminal repeats (LTR) retroelements and relatives, Ty3/Gypsy, Retroviridae, Ty1/Copia and Bel/Pao LTR retroelements and the Caulimoviridae pararetroviruses of plants. New features include: (i) a variety of descriptions and reviews; (ii) protein-based phylogenies, where phylogenetic levels are assigned to distinct classified elements; (iii) a collection of multiple alignments, lineage-specific hidden Markov models and consensus sequences, called GyDB collection; (iv) updated RefSeq databases and BLAST and HMM servers to facilitate sequence characterization of new LTR retroelement and caulimovirus queries; and (v) a bibliographic server.