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Links tagged with 'restriction mapping'

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DyNAVacSTool Content

http://miracle.igib.res.in/dynavac/

DNA > Tools For the Bench
Human Genome > Health and Disease

DyNAVacS is a tool for designing DNA vaccines that includes steps for chosing a suitable expression vector, ensuring optimal expression by codon optimization, engineering CpG motifs for enhancing immune responses, and providing additional sequence signals for efficient translation. It also allows includes restriction enzyme mapping and design of primers spanning user specified sequences.

NAR Web Server Issue 2006
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tagscodon computational biology cpg islands dna primers dna vaccines drug design gene expression polymerase chain reaction restriction mapping systems integration

NDBDatabase Content

http://ndbserver.rutgers.edu/

DNA > DNA and Genomic Analysis
RNA > General Resources

NDB (Nucleic Acid Database) is a repository of three-dimensional structural information about nucleic acids.

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tagsbase sequence dna factual databases molecular sequence data nucleic acid conformation nucleic acid sequence homology proteins restriction mapping rna

NDB ToolsTool Content

http://ndbserver.rutgers.edu/services/

RNA > Motifs
RNA > Structure Prediction, Visualization, and Design

The Nucleic Acid Database (NDB) Tools page includes RNAView and BPView, programs for the visualization and classification of RNA base pairs, motifs, and structures.

NAR Web Server Issue 2003
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tagsalgorithms base pairing base sequence chemical models dna factual databases molecular models molecular sequence data nucleic acid conformation nucleic acid databases nucleic acid sequence homology proteins restriction mapping ribosomal rna rna signal recognition particle statistical data interpretation stereoisomerism terminology as topic water

NEBcutterTool Content

http://tools.neb.com/NEBcutter/index.php3

DNA > Tools For the Bench

NEBcutter finds non-overlapping open reading frames and sites for all enzymes that cut the sequence just once; max length is 100 kb.

NAR Web Server Issue 2003
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tagsdna methylation dna restriction enzymes dna sequence analysis plasmids restriction mapping substrate specificity type ii site-specific deoxyribonucleases

PlasMapperTool Content

http://wishart.biology.ualberta.ca/PlasMapper/index.html

DNA > DNA and Genomic Analysis
DNA > Tools For the Bench

Web server that automatically generates and annotates circular plasmid maps. The tool has: a built in set of features that can be displayed (ie. RE sites, tags, ORFs, etc.); allows users to define custom features to display; contains a library of commonly used plasmids; and, generates nice looking images in a variety of output formats.

NAR Web Server Issue 2004
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tagschromosome mapping dna sequence analysis plasmids restriction mapping