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Links tagged with 'research'

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Bioinformatics Links DirectoryResource Content

http://www.bioinformatics.ca/links_directory/

Education > Directories and Portals

The Bioinformatics Links Directory features curated links to molecular resources, tools and databases. All of the resources are free or available for a nominal fee.

This content is being maintained by Francis Ouellette.

NAR Web Server Issue 2003NAR Web Server Issue 2004NAR Web Server Issue 2005NAR Web Server Issue 2006NAR Web Server Issue 2007NAR Web Server Issue 2008NAR Web Server Issue 2009NAR Web Server Issue 2010NAR Web Server Issue 2011
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external linksLink on TwitterLink on Wikipedia
tagscomputational biology directories as topic factual databases genetic databases genetics humans molecular biology research
setsOntario Institute for Cancer Research (OICR)

FlyBaseDatabase Content

http://flybase.bio.indiana.edu/

Model Organisms > Fly

FlyBase is a database of genetic and molecular data for Drosophila. FlyBase includes data on all species from the family Drosophilidae; the primary species represented is Drosophila melanogaster.

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tagsanimals bibliography as topic california chromosome mapping computational biology drosophila drosophila melanogaster drosophila proteins europe factual databases gene expression gene library genetic databases genetic models genetic transcription genome insect genes mutation phenotype publishing research

GenePath2Tool Content

http://www.genepath.org/genepath2

Protein > Interactions, Pathways, Enzymes

GenePath is a tool for automated construction of genetic networks and proposal of genetic experiments from mutant data.

NAR Web Server Issue 2005
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tagsanimals artificial intelligence caenorhabditis elegans computational biology dictyostelium dna dna mutational analysis dna sequence analysis expert systems gene expression regulation genes genetic epistasis genetic models genomics humans knowledge larva mutation neural networks (computer) research single-blind method

Genome Database for RosaceaeDatabase Content

http://www.rosaceae.org/

DNA > Mapping and Assembly
Expression > cDNA, EST, SAGE
Model Organisms > Plants

Genome Database for Rosaceae (GDR) contains all publically available Rosaceae sequences including annotated peach, strawberry and almond EST sequences and the genetically anchored peach physical map.

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tagschromosome mapping expressed sequence tags genetic databases genetic markers genetics genomics plant genome research rosaceae sequence alignment systems integration

IMCB - Fugu Genome ProjectTool Content

http://www.fugu-sg.org/

Model Organisms > Fish

Lots of information on fugu including complete draft sequence, annotations, comparative vertebrate genomics, phylogenies, publications, and information about the fugu genome project; has some very useful tools including annotation tools, an Ensembl mirror, and BLAST.

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tagsanimals base sequence biological evolution computational biology conserved sequence cosmids dna dna sequence analysis dna transposable elements exons factual databases fish proteins fishes gene duplication gene library gene order genetic models genome genomics human genome humans introns japan mammals microsatellite repeats molecular evolution molecular sequence data nucleic acid repetitive sequences open reading frames phylogeny physical chromosome mapping poisonous fishes proteins proteome research satellite dna sequence alignment synteny takifugu vertebrates

MedMinerTool Content

http://discover.nci.nih.gov/host/1999_medminer_abstract.jsp

Expression > Transcript Expression Analysis
Literature > Text Mining and Semantics

MedMiner can be used to select genes from a microarray set based on GeneCards information. Based on the genes selected one can then search PubMed abstracts using known gene synonyms and other user-specified search parameters. The PubMed search can also be done independently of a microarray gene set. Results are grouped based on a set of relational keywords.

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tagsfactual databases gene expression humans medline research

The Autophagy DatabaseDatabase Content

http://tp-apg.genes.nig.ac.jp/autophagy

Protein > Databases

The Autophagy database provides basic, up-to-date information on relevant literature, and a list of autophagy-related proteins and their homologs. From the database, the user can search for proteins by keywords or sequences to obtain a wealth of data including functional and structural information and find possible functional homologs of proteins whose functions have been demonstrated in other species.

NAR Database Issue 2011
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tagsamino acid sequence homology animals autophagy humans mice phosphatidylinositol phosphates protein databases research

webPIPSATool Content

http://pipsa.h-its.org

Protein > Annotation and Function
Protein > Molecular Dynamics and Docking

webPIPSA is the web server for Protein Interaction Property Similarity Analysis (PIPSA), a procedure for the comparison and analysis of protein electrostatic potentials for a large number of related protein structures. The resulting matrices of pairwise electrostatic similarities may be visualized as epograms or heat maps.

This content is being maintained by wade.

NAR Web Server Issue 2008
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tagsalgorithms binding sites biological models chemical models computer simulation electrostatics enzyme activation enzymes kinetics protein binding protein conformation protein interaction mapping proteins research signal transduction static electricity systems biology triose-phosphate isomerase