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Links tagged with 'reference standards'

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Ensembl Genome BrowserTool Content

http://www.ensembl.org/

DNA > Annotations
Human Genome > Annotations
Model Organisms > General Resources
Model Organisms > Other Organisms

Website, MySQL server and perl API access to software system which produces and maintains automatic annotation on eukaryotic genomes.

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tagsanimals bacterial genome base sequence cattle computational biology database management systems dna sequence analysis dogs fungal genome gene expression genetic databases genetic polymorphism genetic variation genome genomics human genome humans invertebrates mice nucleic acid databases nucleic acid regulatory sequences plant genome protein databases proteins rats reference standards rna sequence alignment species specificity synteny systems integration tertiary protein structure transcriptional regulatory elements

Gene Expression Data AnalyzerTool Content

http://bioinformatics.upmc.edu/GE2/GEDA.html

Expression > Transcript Expression Analysis

The Gene Expression Data Analyzer (GEDA) is a tool for discovering differential gene expression in a subset of patients. It is tailored to cancer-related microarray studies and offers extensive options for visualization, classification and normalization.

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tagsacute disease algorithms artificial intelligence classification cluster analysis gene expression profiling genes human genome humans myeloid leukemia neoplastic gene expression regulation oligonucleotide array sequence analysis predictive value of tests reference standards treatment failure treatment outcome

GenoCADTool Content

http://www.genocad.org

DNA > Tools For the Bench
Expression > Networks
Expression > Protein Expression

GenoCAD is a web-based application for designing protein expression vectors, artificial gene networks and other genetic constructs composed of multiple functional blocks. Users can download the designed sequence for synthesis or further analysis. Users can also create personal accounts and thus can customize their workspace.

This content is being maintained by peccoud.

NAR Web Server Issue 2009
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external linksLink on Twitter
tagsbase sequence chromosome mapping computer simulation dna gene database genetic code genetic engineering genetic models genomic islands nucleic acid databases reference standards synthetic genes

HUPO Proteomics Standards InitiativeResource Content

http://psidev.sourceforge.net/

Protein > Proteomics

HUPO Proteomics Standards Initiative (PSI) provides data representation standards to facilitate the exchange, comparison and validation of proteomics data.

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tagsbiochemistry database management systems guidelines as topic humans internationality mass spectrometry natural language processing peptide mapping protein binding protein databases protein interaction mapping proteins proteomics reference standards

NCBI Human DNA Reference SequenceDatabase Content

http://www.ncbi.nlm.nih.gov/RefSeq/

DNA > Sequence Retrieval and Submission
Human Genome > Annotations
Model Organisms > Mouse and Rat
Model Organisms > Yeast

Downloadable human DNA reference sequence as well as other reference genome sequences.

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tagsamino acid sequence animals base sequence dna sequence analysis exons genetic databases genome genomics humans messenger rna mice national library of medicine (u.s.) nucleic acid databases protein databases protein sequence analysis proteins pseudogenes rats reference standards rna sequence analysis sequence analysis systems integration united states untranslated rna

Viral BioinformaticsTool Content

http://athena.bioc.uvic.ca/

Model Organisms > Other Organisms
Protein > Sequence Features
Sequence Comparison > Alignment Editing and Visualization
Sequence Comparison > Comparative Genomics
Sequence Comparison > Multiple Sequence Alignments
Sequence Comparison > Pairwise Sequence Alignments
Sequence Comparison > Similarity Searching

Viral Bioinformatics provides access to viral genomes and a variety of tools for comparative genomic analyses.

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tagsalgorithms amino acid sequence amino acid sequence homology animals bacterial genome base composition base sequence biological models canada capripoxvirus chlamydophila pneumoniae cluster analysis computational biology computer systems database management systems dna dna sequence analysis documentation factual databases fuzzy logic genetic databases genome genomics humans molecular evolution molecular sequence data multigene family multimedia mutation nucleic acid databases nucleic acid regulatory sequences nucleotides open reading frames phylogeny poxviridae programming languages protein databases protein sequence analysis reference standards sequence alignment statistical data interpretation systems integration technology transfer thermoplasma vaccinia virus variola virus viral dna viral genes viral genome viral proteins

Virus Genotyping ToolsTool Content

http://bioafrica.mrc.ac.za/rega-genotype/html/

DNA > Phylogeny Reconstruction
Model Organisms > Microbes

This web server facilitates high-throughput virus genotyping by aligning query sequences to a pre-defined set of reference strains and then computing phylogenetic analysis.

NAR Web Server Issue 2009
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tagsbase sequence genetic recombination genetic variation genotype hepacivirus hepatitis b virus hiv-1 phylogeny reference standards sequence alignment sequence analysis viruses