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Links tagged with 'pseudomonas aeruginosa'

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DBAliDatabase Content

http://salilab.org/DBAli/

Protein > 3-D Structure Comparison
Protein > Annotation and Function
Protein > Domains and Motifs

DBAli is a database that includes a comprehensive all-against-all comparison of protein structures in the PDB database. Tools associated with the database allow users to mine this protein structure space by establishing relationships between protein structures and their functions.

NAR Web Server Issue 2007
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tagsalgorithms amino acid sequence amino acid sequence homology computational biology molecular sequence data protein conformation protein databases protein sequence analysis proteins pseudomonas aeruginosa sequence alignment software design statistical data interpretation structure-activity relationship

JCatTool Content

http://www.jcat.de/

DNA > Structure and Sequence Feature Detection
Model Organisms > General Resources

JCAT (Java Codon Adaptation Tool) is a tool that can adjust the codon usage of an input sequence to the selected organism. Useful for improving the expression of foreign genes in hosts with different codon usage.

NAR Web Server Issue 2005
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tagsalgorithms animals caenorhabditis elegans codon escherichia coli gene expression pseudomonas aeruginosa recombinant proteins species specificity

MobilomeFINDERTool Content

http://mml.sjtu.edu.cn/MobilomeFINDER/

Model Organisms > Microbes
Sequence Comparison > Comparative Genomics

MobilomeFINDER (Mobile Genome FINDER) is a tool for high-throughput genomic island discovery.

NAR Web Server Issue 2007
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tagsalgorithms bacterial genes bacterial genome bacterial rna computational biology enterobacteriaceae escherichia coli escherichia coli k12 fungal gene expression regulation genomic islands genomics oligonucleotide array sequence analysis polymerase chain reaction pseudomonas aeruginosa shigella shigella flexneri streptococcus suis theoretical models transfer rna

ProdoNetTool Content

http://www.prodonet.tu-bs.de

Expression > Networks
Expression > Protein Expression
Expression > Transcript Expression Analysis
Expression > cDNA, EST, SAGE
Model Organisms > Microbes

A web-based application for the mapping of prokaryotic genes and the corresponding proteins to common gene regulatory and metabolic networks. Users input a list of genes from which shared operons, co-expressed genes and shared regulators are detected. Common metabolic pathways are then viewed on KEGG maps.

NAR Web Server Issue 2008
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tagsbacteria bacterial genes bacterial proteins gene expression profiling gene regulatory networks membrane proteins metabolic networks and pathways operon pseudomonas aeruginosa regulon

Pseudomonas Genome DatabaseDatabase Content

http://www.pseudomonas.com

Model Organisms > Databases

The Pseudomonas Genome Database integrates completely-sequenced Pseudomonas genome sequences and their annotations with genome-scale, high-precision computational predictions, experimental data, and manually curated, community-based annotation updates. Comparative genomics analyses incorporate robust genera-geared methods for predicting and clustering orthologs.

This content is being maintained by fionabrinkman.

NAR Database Issue 2011
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tagsbacterial dna bacterial gene expression regulation bacterial genes bacterial genome bacterial proteins computational biology dna sequence analysis genetic databases genetic polymorphism genomic islands genomics human genome humans microbial drug resistance molecular sequence data pseudomonas pseudomonas aeruginosa pseudomonas infections species specificity systems integration voluntary workers

Pseudomonas Genome ProjectDatabase Content

http://pseudomonas.com/

Model Organisms > Microbes

This is a comprehensive database on all Pseudomonas species genomes providing primarily access to Pseudomonas aeruginosa genomic data and annotation. Its interface faciliates comparative analyses of genes, proteins, annotations and gene orders, and contains a wealth of additional data including pathway-based, operon-based, protein-localization based, gene function category and ortholog/paralog-based information.

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tagsbacterial dna bacterial gene expression regulation bacterial genome bacterial proteins computational biology dna sequence analysis genetic databases genomics humans microbial drug resistance molecular sequence data pseudomonas aeruginosa pseudomonas infections species specificity systems integration