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Links tagged with 'proteasome endopeptidase complex'

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PcleavageTool Content

http://www.imtech.res.in/raghava/pcleavage/

Protein > Sequence Features

Pcleavage is a tool that uses a support vector machine to predict immunoproteasome and constitutive proteasome cleavage sites in antigenic sequences.

This content is being maintained by raghavagps.

NAR Web Server Issue 2005
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tagsantigens artificial intelligence histocompatibility antigens class i ligands proteasome endopeptidase complex protein sequence analysis proteins

PEPVACTool Content

http://immunax.dfci.harvard.edu/PEPVAC/

Human Genome > Health and Disease
Protein > Annotation and Function
Protein > Interactions, Pathways, Enzymes

PEPVAC is a tool to assist in the development of multi-epitope vaccines. It is optimized for this task by predicting peptides with the ability to bind to several human leukocyte antigens that have similar peptide binding specificity.

NAR Web Server Issue 2005
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tagshla-a antigens hla-b antigens humans ligands peptides proteasome endopeptidase complex protein sequence analysis t-lymphocyte epitopes vaccines

STRAPTool Content

http://www.bioinformatics.org/strap/

Protein > 3-D Structure Comparison
Sequence Comparison > Alignment Editing and Visualization
Sequence Comparison > Multiple Sequence Alignments

The Structural Alignment Program for Proteins (STRAP) is a java-based program that can be run over the web using a Java Web Start enabled browser or downloaded and run as a stand-alone application. Alignments can be done using one of several methods, including ClustalW, JAligner and T_coffee. STRAP is also able to incorporate structure information and interfaces with programs such as Pymol and Rasmol. There is also a tutorial included.

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tagscysteine endopeptidases factual databases molecular models multienzyme complexes proteasome endopeptidase complex protein databases protein sequence analysis proteins sequence alignment