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Links tagged with 'plant diseases'

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NIASGBdbDatabase Content

http://www.gene.affrc.go.jp/databases_en.php

Model Organisms > Databases

The National Institute of Agrobiological Sciences Genebank Project database (NIASGBdb) consists of a genetic resource database and a plant diseases database, linked by a web retrieval database. The genetic resources database has plant and microorganism search systems to provide information on research materials, including passport and evaluation data for genetic resources with the desired properties. A database of plant diseases in Japan has been developed based on the listing of common names of plant diseases compiled by the Phytopathological Society of Japan. Relevant plant and microorganism genetic resources are associated with the plant disease names.

NAR Database Issue 2011
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tagsagricultural crops fungal dna fusarium genetic databases genetic markers genetic variation plant diseases

Plant Resistance Genes databaseDatabase Content

http://www.prgdb.org

Model Organisms > Databases

PRGdb is a database provides a comprehensive overview of resistance genes (R-genes) in plants. PRGdb holds more than 16,000 known and putative R-genes belonging to 192 plant species challenged by 115 different pathogens and linked with useful biological information. Data can be examined using different query tools. A prediction pipeline called Disease Resistance Analysis and Gene Orthology (DRAGO), based on reference R-gene sequence data, was developed to search for plant resistance genes in public datasets such as Unigene and Genbank. The inferred cross-link between genomic and phenotypic information allows access to a large body of information.

NAR Database Issue 2010
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tagscomputational biology gene expression profiling genetic databases nucleic acid databases oxidative stress plant diseases plant genes plant genome plants protein databases tertiary protein structure

PlnTFDBDatabase Content

http://plntfdb.bio.uni-potsdam.de/v3.0/

Expression > Gene Regulation
Model Organisms > Plants

Plant Transcription Factor Database (PlantTFDB) is database that attempts to identify a comprehensive set of plant genes coding for transcription factors. A web interface to the database allows users to browse by species, search using a sequence identifier, or query using BLAST.

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tagscomputational biology gene regulatory networks genetic databases genetic promoter regions plant diseases plant gene expression regulation plant genes plant genome plant proteins plants protein databases sequence alignment tertiary protein structure transcription factors

PlnTFDBDatabase Content

http://plntfdb.bio.uni-potsdam.de/

Model Organisms > Databases

The Plant Transcription Factor Database (PlnTFDB) is an integrative database that provides putatively complete sets of transcription factors (TFs) and other transcriptional regulators (TRs) in plant species whose genomes have been completely sequenced and annotated. For each gene family, a basic description is provided that is complemented by literature references, and multiple sequence alignments of protein domains. TF or TR gene entries include information of expressed sequence tags, 3D protein structures of homologous proteins, domain architecture and cross-links to other computational resources online. Moreover, the different species in PlnTFDB are linked to each other by means of orthologous genes facilitating cross-species comparisons.

NAR Database Issue 2010
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tagscomputational biology gene regulatory networks genetic databases plant diseases plant gene expression regulation plant genes plant genome plant proteins plants protein databases tertiary protein structure transcription factors