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Links tagged with 'online systems'

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Found 13 links

Displaying 13 links

BioPerlTool Content

http://www.bioperl.org/

Computer Related > Bio-* Programming Tools
Computer Related > PERL

The BioPerl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research.

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tagsalgorithms animals biological science disciplines computational biology computer systems database management systems genetic databases humans online systems programming languages software design systems integration
setsOpen Bioinformatics Foundation

DASMIwebDatabase Content

http://www.dasmiweb.de

Protein > Interactions, Pathways, Enzymes
Protein > Sequence Retrieval

The DASMIweb server allows integration, analysis and quantitative assessment of distributed sources of protein and domain interactions. Users can query numerous sources simultaneously, which can then be configured and can support incorporation of user data.

NAR Web Server Issue 2009
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tagsonline systems protein interaction domains and motifs protein interaction mapping systems integration

GelScape and GelBankTool Content

http://www.gelscape.ualberta.ca/

Expression > Protein Expression
Protein > Protein Expression

GelScape is a platform-independent 1D and 2D gel analysis system that is freely available. Features include the ability to mark spots, to measure spot intensities and to archive gel images and annotations to the public database GelBank. Includes searchable access to GelBank\'s repository.

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tagsdatabase management systems documentation factual databases gel electrophoresis online systems polyacrylamide gel electrophoresis

GeneHub-GEPISTool Content

http://www.cgl.ucsf.edu/Research/genentech/genehub-gepis/

Expression > cDNA, EST, SAGE
Human Genome > Other Resources
Model Organisms > Mouse and Rat

GeneHub-GEPIS is a tool for inferring human and mouse gene expression patterns based on normalized EST abundance in various normal and cancerous tissues.

NAR Web Server Issue 2007
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tagsalgorithms biological tumor markers chromosome mapping dna sequence analysis expressed sequence tags gene expression profiling genetic testing humans neoplasms online systems sequence alignment

Microbial Genome ViewerTool Content

http://www.cmbi.ru.nl/MGV/

Model Organisms > Microbes

Tool for visualization of microbial genomes. Chromosome wheels and linear genome maps with user specified features/color coding can be generated interactively. Graphics are created in SVG format.

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tagsbacterial genome chromosome mapping fungal genome gene expression profiling genomics online systems

ModelTest SeverTool Content

http://darwin.uvigo.es/software/modeltest_server.html

DNA > Phylogeny Reconstruction

ModelTest is program for the selection the model of DNA evolution (nucleotide substitution) that best fits your data from phylogenetic analyses.

NAR Web Server Issue 2006
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tagsalgorithms base composition bayes theorem biological models dna dna sequence analysis genetic variation likelihood functions molecular evolution nucleotides online systems sequence alignment statistical models

Pathway MinerTool Content

http://www.biorag.org/pathway.html

Protein > Interactions, Pathways, Enzymes

Pathway Miner is a tool for searching lists of genes for associations in known pathway data from KEGG, BioCarta, and GenMAPP. Also provides statistical analyses.

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tagsalgorithms biological models computer simulation gene expression regulation oligonucleotide array sequence analysis online systems protein interaction mapping signal transduction

PDBselectDatabase Content

http://bioinfo.tg.fh-giessen.de/pdbselect/

Protein > Databases

PDBselect is a list of representative protein chains with low mutual sequence identity selected from the protein data bank (PDB) to enable unbiased statistics. PDBfilter-select is an online service to generate user-defined selections.

NAR Database Issue 2010
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tagsanimals computational biology genetic databases humans online systems protein databases proteins tertiary protein structure

REDflyDatabase Content

http://redfly.ccr.buffalo.edu/?content=/search.php

Expression > Gene Regulation
Model Organisms > Fly

Regulatory Element Database for Drosophila (REDfly) is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs). REDfly seeks to include all experimentally verified fly CRMs along with their DNA sequence, their associated genes, and the expression patterns they direct.

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tagsanimals binding sites drosophila melanogaster drosophila proteins genetic databases genetic enhancer elements genomics online systems synteny systems integration transcription factors transcriptional regulatory elements

REDflyDatabase Content

http://redfly.ccr.buffalo.edu

Model Organisms > Databases

The REDfly database of Drosophila transcriptional cis-regulatory elements provides experimentally validated cis-regulatory modules and transcription factor binding sites. The user interface is designed for access by both causal and power users and is intended as a tool for facilitating computational as well as experimental studies of transcriptional regulation.

This content is being maintained by halfon.

NAR Database Issue 2011
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tagsanimals binding sites drosophila melanogaster drosophila proteins genetic databases genetic enhancer elements genomics online systems synteny systems integration transcription factors transcriptional regulatory elements

STING MilleniumTool Content

http://luna.bioc.columbia.edu/SMS/STINGm/

Protein > 3-D Structural Features
Protein > 3-D Structure Comparison
Protein > Annotation and Function
Protein > Biochemical Features
Protein > Phylogeny Reconstruction
Protein > Sequence Comparison

STING is a suite of tools for the analysis of protein sequence, structure, stability and function - and the relationships between them.

NAR Web Server Issue 2003NAR Web Server Issue 2005
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tagsacid anhydride hydrolases algorithms alpha-amylases amino acid sequence amino acid sequence homology amino acids animals beetles binding sites chemical models chymotrypsin color computational biology computer simulation conserved sequence enzyme inhibitors fabaceae hiv integrase hydrogen bonding lectins medicinal plants molecular cloning molecular models molecular sequence data molecular structure online systems ovomucin plant lectins plant proteins proprotein convertases protein binding protein conformation protein databases protein interaction mapping protein sequence analysis protein structural homology proteins quaternary protein structure recombinant proteins sequence alignment structure-activity relationship systems integration x-ray crystallography

Swiss ModelTool Content

http://www.expasy.ch/swissmod/SWISS-MODEL.html

Protein > 3-D Structure Prediction

Automated protein modelling server.

NAR Web Server Issue 2003
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tagsalgorithms amino acid sequence amino acid sequence homology animals artificial intelligence automation chemical models computational biology computer simulation factual databases genome humans molecular models molecular sequence data online systems protein conformation protein databases protein sequence analysis protein structural homology proteins reproducibility of results sequence alignment switzerland systems integration

TavernaTool Content

http://taverna.sourceforge.net/

Computer Related > Web Services
DNA > Annotations
DNA > Gene Prediction
Human Genome > Annotations
Protein > Interactions, Pathways, Enzymes
Sequence Comparison > Similarity Searching

Taverna is a tool for creating and running bioinformatics workflows.

NAR Web Server Issue 2006
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tagscomputational biology database management systems genetic databases genomics online systems sequence analysis software design systems integration
setsUniversity of Manchester