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Links tagged with 'nucleic acid probes'

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GenomeRNAiDatabase Content

http://rnai2.dkfz.de

Model Organisms > Databases

The GenomeRNAi database contains phenotypes from published cell-based RNA interference (RNAi) screens in Drosophila and Homo sapiens. The database connects observed phenotypes with annotations of targeted genes and information about the RNAi reagent used for the perturbation experiment. GenomeRNAi also enables reporting of data from microscopy experiments and curated phenotypes from published screens. In addition, the database provides an updated resource of RNAi reagents and their predicted quality that are available for the Drosophila and the human genome. GenomeRNAi also facilitates the integration with other genomic data sets and contains expression profiling (RNA-Seq) data for several cell lines commonly used in RNAi experiments.

NAR Database Issue 2010
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tagsanimals cell line computational biology drosophila melanogaster genetic databases genomics humans nucleic acid databases nucleic acid probes protein databases rna interference tertiary protein structure

IccareTool Content

http://genopole.toulouse.inra.fr/bioinfo/Iccare/

Sequence Comparison > Other Alignment Tools

The Iccare (Interspecific Comparative Clustering and Annotation foR Est) web server compares all available EST and mRNA sequences for a query organism against the set of transcripts for a reference organism. The results are presented graphically and relative to the location of genes on the chromosomes of the reference organism.

NAR Web Server Issue 2004
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tagsanimals arabidopsis chromosome mapping dna primers dna sequence analysis expressed sequence tags human genome humans messenger rna nucleic acid databases nucleic acid probes nucleic acid sequence homology plant genes rna sequence analysis rna splice sites systems integration

SNPmaskerTool Content

http://bioinfo.ebc.ee/snpmasker/

DNA > Sequence Polymorphisms
DNA > Structure and Sequence Feature Detection
DNA > Tools For the Bench
Expression > Transcript Expression Analysis
Human Genome > Sequence Polymorphisms

SNPmasker masks SNPs in a given sequence using information from the dbSNP database. This tool can also be used to mask repeat sequences. SNPmasker is primarily designed for masking the sequences before primer and probe design.

NAR Web Server Issue 2006
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tagsalleles animals dna primers genomics human genome humans mice nucleic acid databases nucleic acid probes nucleic acid repetitive sequences single nucleotide polymorphism