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Links tagged with 'neoplastic gene expression regulation'

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CCancerDatabase Content

http://mips.helmholtz-muenchen.de/proj/ccancer

Expression > Gene Set Analysis
Literature > Open Access Resources

CCancer is an automatically collected database of gene lists reported in various studies. The current coverage is 3369 gene lists from 2644 papers. Enrichment analysis reports intersecting gene lists with an inputted gene list.

NAR Web Server Issue 2010
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tagsaniline compounds cell aging data mining genetic databases humans monte carlo method neoplasm genes neoplasm proteins neoplasms neoplastic gene expression regulation nitriles protein kinase inhibitors quinolines

dbDEPCDatabase Content

http://lifecenter.sgst.cn/dbdepc/index.do

Human Genome > Databases
Protein > Databases

A database of differentially expressed proteins in human cancers (dbDEPC) collects curated cancer proteomics data, provides a resource for information on protein-level expression changes, and explores protein profile differences among different cancers. dbDEPC currently contains 1803 proteins differentially expressed in 15 cancers, curated from 65 mass spectrometry (MS) experiments in peer-reviewed publications.

NAR Database Issue 2010
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tagscomputational biology dna gene expression profiling genetic databases human genome humans neoplasms neoplastic gene expression regulation protein databases proteome rna

Gene Expression Data AnalyzerTool Content

http://bioinformatics.upmc.edu/GE2/GEDA.html

Expression > Transcript Expression Analysis

The Gene Expression Data Analyzer (GEDA) is a tool for discovering differential gene expression in a subset of patients. It is tailored to cancer-related microarray studies and offers extensive options for visualization, classification and normalization.

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tagsacute disease algorithms artificial intelligence classification cluster analysis gene expression profiling genes human genome humans myeloid leukemia neoplastic gene expression regulation oligonucleotide array sequence analysis predictive value of tests reference standards treatment failure treatment outcome

GeneSigDBDatabase Content

http://compbio.dfci.harvard.edu/genesigdb

Expression > Databases

GeneSigDB is a manually curated database of gene expression signatures. GeneSigDB focuses on cancer, development, and stem cell gene signatures and was constructed from thousands of publications from which we manually transcribe gene signatures. Gene signatures are mapped to the genome to extract standardized lists of EnsEMBL gene identifiers. GeneSigDB provides the original gene signature, the standardized gene list and a fully traceable gene mapping history for each gene from the original transcribed data table through to the standardized list of genes. GeneSigDB release 3.0 (Decemeber 2010) contained over 2,000 gene signatures.

NAR Database Issue 2010
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tagsalgorithms computational biology gene expression profiling genetic databases humans neoplasms neoplastic gene expression regulation nucleic acid databases oligonucleotide array sequence analysis protein databases stem cells

Network of Cancer GenesDatabase Content

http://bio.ifom-ieo-campus.it/ncg2

Human Genome > Databases

The Network of Cancer Genes (NCG) collects and integrates data on 736 human genes that are mutated in various types of cancer. For each gene, NCG provides information on duplicability, orthology, evolutionary appearance and topological properties of the encoded protein in a comprehensive version of the human protein-protein interaction network. NCG also stores information on all primary interactors of cancer proteins, thus providing a complete overview of 5357 proteins that constitute direct and indirect determinants of human cancer.

NAR Database Issue 2010
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tagsanimals computational biology gene expression profiling gene regulatory networks genetic databases humans mutation neoplasm genes neoplasms neoplastic gene expression regulation nucleic acid databases plant genome

Onto-ToolsTool Content

http://vortex.cs.wayne.edu/Projects.html

DNA > Annotations
DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation
Expression > Transcript Expression Analysis
Protein > Biochemical Features
Protein > Interactions, Pathways, Enzymes
Sequence Comparison > Similarity Searching

Onto-Tools is a suite of tools for data mining based on information from Gene Ontology (GO). Onto-Tools includes an annotation database and the data mining tools: Onto-Express, Onto-Compare, Onto-Design, Onto-Translate, Onto-Miner, Pathway-Express, Promoter-Express, nsSNPCounter, TAQ, and OE2GO; free registration is required.

NAR Web Server Issue 2004NAR Web Server Issue 2005NAR Web Server Issue 2003NAR Web Server Issue 2006NAR Web Server Issue 2007
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tagsanimals bias (epidemiology) binding sites biomedical technology assessment breast neoplasms caenorhabditis elegans computational biology dna sequence analysis drosophila melanogaster equipment failure analysis female gene expression profiling genes genetic databases genetic promoter regions genomics humans mice molecular evolution multigene family neoplasms neoplastic gene expression regulation nucleic acid databases oligonucleotide array sequence analysis programming languages proteins rats reproducibility of results sensitivity and specificity sequence alignment single nucleotide polymorphism software design statistical data interpretation systems integration transcription factors

Pancreatic Expression databaseDatabase Content

http://www.pancreasexpression.org

Expression > Databases

The Pancreatic Expression database (PED) is a repository for pancreatic-derived -omics data. It includes easurements derived from transcriptomics, proteomics, genomics and miRNA profiles from various pancreas-centred reports on a broad range of specimen and experimental types.

NAR Database Issue 2011
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tagsanimals computational biology database management systems dna copy number variations gene expression gene expression profiling genetic databases genomics humans micrornas neoplastic gene expression regulation pancreas pancreatic neoplasms proteomics search engine

QuadruplexTool Content

http://www.quadruplex.org

DNA > Structure and Sequence Feature Detection

A website to serve the quadruplex community. Contains conference information, forums, database and parsers.

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tagsanimals antineoplastic agents drug design g-quadruplexes gene expression regulation gene therapy genetic promoter regions guanine humans ligands molecular models molecular structure neoplasms neoplastic gene expression regulation nucleic acid conformation telomere theoretical models

SEPACSTool Content

http://fred.bioinf.uni-sb.de/sepacs.html

Protein > Annotation and Function

SEPACS (Seroreactivity Pattern Classification System) is a a web-based application for classification of seroreactivity profiles.

NAR Web Server Issue 2007
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tagsalgorithms bayes theorem blood proteins brain neoplasms computational biology dna genetic markers glioma humans meningioma mutation neoplastic gene expression regulation oligonucleotide array sequence analysis sensitivity and specificity