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Links tagged with 'mycobacterium tuberculosis'

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iCRTool Content

http://210.212.215.199/icr/index.html

DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation
Protein > Interactions, Pathways, Enzymes

Identify Conserved targets of a Regulon (iCR) predicts regulatory binding sites based on conservation across multiple species. The user provides an ungapped multiple sequence alignment representing the regulatory binding site. iCR reports back with predicted binding sites that are conserved and highlights the downstream co-regulated genes.

NAR Web Server Issue 2006
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tags5' flanking region bacterial genome bacterial proteins binding sites dna-binding proteins genomics mycobacterium tuberculosis nucleic acid regulatory sequences operon prokaryotic cells regulon sequence alignment serine endopeptidases transcription factors transcriptional regulatory elements

MIRU-VNTRplusTool Content

http://www.miru-vntrplus.org

DNA > Phylogeny Reconstruction
Human Genome > Health and Disease
Model Organisms > Microbes

MIRU-VNTRplus allows users to analyze genotyping data of their Mycobacterium tuberculosis strains either alone or in comparison with the reference DB of strains. The web server also includes tools to search for similar strains, phylogenetic analysis and mapping of geographic information.

NAR Web Server Issue 2010
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tagsbacterial dna bacterial typing techniques cluster analysis dna fingerprinting genetic databases genetic polymorphism genotype humans interspersed repetitive sequences microbial sensitivity tests minisatellite repeats molecular epidemiology mycobacterium tuberculosis phylogeny restriction fragment length polymorphism tuberculosis

PredictRegulonTool Content

http://www.cdfd.org.in/predictregulon/

DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation

PredictRegulon is a tool that, for a given regulatory protein and prokaryotic genome, predicts binding sites and operons. The user selects a prokaryote genome and provides an ungapped multiple sequence alignment representing the binding site. PredictRegulon reports back with predicted binding sites and downstream co-regulated genes.

NAR Web Server Issue 2004
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tags5' flanking region bacterial genome bacterial proteins binding sites mycobacterium tuberculosis nucleic acid regulatory sequences operon prokaryotic cells regulon sequence alignment serine endopeptidases transcription factors

RegAnalystTool Content

http://www.nii.ac.in/~deepak/RegAnalyst/

DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation
Model Organisms > Microbes

RegAnalyst is a web server that integrates MoPP (Motif Prediction Program), MyPatternFinder and MycoRegDB (mycobacterial promoter and regulatory elements database).

NAR Web Server Issue 2009
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tagsbase sequence consensus sequence gene regulatory networks genetic promoter regions mycobacterium mycobacterium tuberculosis saccharomyces cerevisiae systems integration transcriptional regulatory elements

YMF 3.0Tool Content

http://wingless.cs.washington.edu/YMF/YMFWeb/YMFInput.pl

DNA > Structure and Sequence Feature Detection

YMF 3.0 (Yeast Motif Finder) is a tool that identifies good candidates for transcription factor binding sites by searching for statistically overrepresented motifs. Multiple organisms are supported including human, yeast, worm, plants, and microbes.

NAR Web Server Issue 2003
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tagsalgorithms binding sites dna sequence analysis genetic promoter regions mycobacterium tuberculosis nucleic acid regulatory sequences saccharomyces cerevisiae statistical data interpretation transcription factors

zPicture and multi-zPictureTool Content

http://zpicture.dcode.org/

Sequence Comparison > Multiple Sequence Alignments
Sequence Comparison > Pairwise Sequence Alignments

zPicture (pairwise alignment) and multi-zPicture (multiple alignment) are web-based sequence alignment tools based on the blastz alignment program. Alignments from zPicture can be automatically submitted to rVista.

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tagsanimals bacterial dna bacterial genome binding sites conserved sequence humans mice mycobacterium leprae mycobacterium tuberculosis nucleic acid sequence homology sequence alignment transcription factors