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Links tagged with 'mitochondrial proteins'

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MitoGenesisDBDatabase Content

http://www.dsimb.inserm.fr/dsimb_tools/mitgene/

Protein > Databases
RNA > Databases

MitoGenesisDB focuses on the dynamic of mitochondrial protein formation through global mRNA analyses. Three main parameters confer a global view of mitochondrial biogenesis: (i) time-course of mRNA production in highly synchronized yeast cell cultures, (ii) microarray analyses of mRNA localization that define translation sites and (iii) mRNA transcription rate and stability which characterize genes that are more dependent on post-transcriptional regulation processes. MitoGenesisDB integrates and establishes cross-comparisons between these data. Several model organisms can be analyzed via orthologous relationships between interspecies genes.

NAR Database Issue 2011
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tagsdata mining electron transport genetic transcription messenger rna mitochondria mitochondrial genes mitochondrial proteins protein biosynthesis protein databases rna stability saccharomyces cerevisiae saccharomyces cerevisiae proteins

MITOPREDTool Content

http://bioinformatics.albany.edu/~mitopred/

Protein > Annotation and Function

MITOPRED uses Pfam domains, pI values and amino acid composition to predict nuclear-encoded mitochondrial proteins. Predictions have been precomputed for a number of proteomes, as well as for all Eukaryotic sequences in Swiss-Prot and TrEMBL. Users may directly enter or upload a file with a list of protein sequences or Swiss-Prot/TrEMBL accession numbers.

NAR Web Server Issue 2004
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tagsalgorithms animals cell nucleus gene expression profiling genome humans mitochondrial proteins protein databases protein sequence analysis proteome reproducibility of results sensitivity and specificity sequence alignment software design tertiary protein structure tissue distribution

PREP SuiteTool Content

http://prep.unl.edu/

Model Organisms > Plants
RNA > Motifs

The PREP (Predictive RNA Editors for Plants) suite predicts sites of RNA editing based on the principle that editing in plant organelles increases the conservation of proteins across species. Predictors for mitochondrial genes, chloroplast genes, and alignments input by the user are included.

This content is being maintained by jpmower.

NAR Web Server Issue 2009
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tagsamino acid sequence amino acid sequence homology base sequence binding sites chloroplast rna chloroplasts computational biology conserved sequence cytidine dna dna sequence analysis mitochondrial genes mitochondrial proteins molecular sequence data phylogeny plant dna plant gene expression regulation plant genes plant genome plant proteins protein binding protein databases reproducibility of results rna rna editing rna sequence analysis sensitivity and specificity sequence alignment statistical models