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Links tagged with 'miRNA'

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miRvestigatorTool Content

http://mirvestigator.systemsbiology.net

Expression > Gene Regulation

miRvestigator is a web based tool to identify miRNAs mediating co-regulation of gene expression patterns observed in transcriptome profilng data. The miRvestigator takes as input a list of co-expressed genes and returns the most likely miRNA regulating the genes. It searches for an over-represented sequence motif in the 3' UTRs of the genes using Weeder and compares the motif to all unique miRNA seed sequences in miRBase using our custom built miRvestigator hidden Markov model (HMM).

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NAR Web Server Issue 2011
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tags3' untranslated regions animals Co-expression Co-Regulation gene expression profiling gene expression regulation Gene Set humans mice micrornas miRNA rats rna sequence analysis

ToppCluster - comparative enriched features network generator and analyzerTool Content

http://toppcluster.cchmc.org

Expression > Gene Set Analysis

ToppCluster is a human/mammalian genomes-centered web server application for comparative enrichment and network analysis of multiple gene lists. Features such as Gene Ontology terms, protein interactions,disease or disease-associated mammalian phenotypes, promoter cis-elements, miR binding sites, etc. that are differentially represented in the gene lists can be clustered or transformed into high dimensional Cytoscape or Gephi -compatible networks.

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NAR Web Server Issue 2010
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tagsbiological systems analysis gene expression cluster analysis gene expression profiling gene regulatory networks miRNA