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Links tagged with 'microsatellite repeats'

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GenoWatchTool Content

http://genepipe.ngc.sinica.edu.tw/genowatch

Human Genome > Health and Disease
Human Genome > Sequence Polymorphisms

A disease gene mining browser for association study. GenoWatch is a real-time batch SNP and short tandem repeat polymorphism pipeline that extracts current information from public domain websites such as NCBI, UniProt, KEGG and GO so that users can select the appropriate disease candidate genes.

NAR Web Server Issue 2008
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tagschromosome mapping genes genetic databases genetic markers genetic polymorphism human genome humans inborn genetic diseases microsatellite repeats pubmed single nucleotide polymorphism

H-InvDBDatabase Content

http://www.h-invitational.jp/

Human Genome > Databases

The H-Invitational Database (H-InvDB) is a comprehensive annotation resource of human genes and transcripts. The latest release of H-InvDB (release 6.2) provides the annotation for 219,765 human transcripts in 43,159 human gene clusters based on human full-length cDNAs and mRNAs. H-InvDB now provides several new annotation features, such as mapping of microarray probes, new gene models, relation to known ncRNAs and information from the Glycogene database. H-InvDB also provides useful data mining resources-'Navigation search', 'H-InvDB Enrichment Analysis Tool (HEAT)' and web service APIs.

This content is being maintained by cyamasak.

NAR Database Issue 2010
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tagsalternative splicing complementary dna computational biology genes genetic databases genetic models genetic polymorphism human genome humans messenger rna microsatellite repeats multigene family nucleic acid databases oligonucleotide array sequence analysis open reading frames single nucleotide polymorphism tertiary protein structure

IMCB - Fugu Genome ProjectTool Content

http://www.fugu-sg.org/

Model Organisms > Fish

Lots of information on fugu including complete draft sequence, annotations, comparative vertebrate genomics, phylogenies, publications, and information about the fugu genome project; has some very useful tools including annotation tools, an Ensembl mirror, and BLAST.

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tagsanimals base sequence biological evolution computational biology conserved sequence cosmids dna dna sequence analysis dna transposable elements exons factual databases fish proteins fishes gene duplication gene library gene order genetic models genome genomics human genome humans introns japan mammals microsatellite repeats molecular evolution molecular sequence data nucleic acid repetitive sequences open reading frames phylogeny physical chromosome mapping poisonous fishes proteins proteome research satellite dna sequence alignment synteny takifugu vertebrates

PSSRdbDatabase Content

http://www.cdfd.org.in/PSSRdb/

DNA > Databases

PSSRdb (Polymorphic Simple Sequence Repeats database) is a relational database of polymorphic simple sequence repeats (PSSRs) extracted from different species of prokaryotes. This database gives useful information such as location of PSSRs in genomes, length variation across genomes, the regions harboring PSSRs, etc.

NAR Database Issue 2011
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tagsbacterial genome genetic polymorphism genomics microsatellite repeats nucleic acid databases

Rat Genome Database (RGD)Database Content

http://rgd.mcw.edu/

Model Organisms > Mouse and Rat

The Rat Genome Database (RGD) is a repository of rat genetic and genomic data. As well as integrating this data with mapping, physiological and strain information, RGD also provides researchers with several tools that facilitate searching, data mining and data analysis.

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tagsanimal disease models animals cardiovascular diseases chromosome mapping database management systems disease genetic databases genetic markers genetic variation genome genomics genotype heritable quantitative trait humans inborn genetic diseases inbred strains rats mice microsatellite repeats nervous system diseases nucleic acid databases phenotype quantitative trait loci radiation hybrid mapping rats sequence homology signal transduction systems integration terminology as topic

SatellogDatabase Content

http://satellog.bcgsc.ca/

DNA > Structure and Sequence Feature Detection
Human Genome > Health and Disease

Satellog is a database for the identification and prioritization of satellite repeats in disease association studies.

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tags3' untranslated regions base sequence biomedical research cluster analysis computational biology dna sequence analysis genetic databases genetic polymorphism genetic predisposition to disease human genome humans huntington disease inborn genetic diseases microsatellite repeats nucleic acid databases schizophrenia sequence alignment trinucleotide repeat expansion trinucleotide repeats untranslated regions

SelTarbaseDatabase Content

http://www.seltarbase.org

Human Genome > Databases

The Selective Targets database is a curated database of a growing number of public mononucleotide repeat tracts (MNR) mutation data in microsatellite unstable human tumors. Regression calculations for various microsatellite instability (MSI) -H tumor entities indicating statistically deviant mutation frequencies predict genes that are shown or highly suspected to be involved in MSI tumorigenesis. Many useful tools for further analyzing genomic DNA, derived wild-type and mutated cDNAs and peptides are integrated. A comprehensive database of all human coding, untranslated, non-coding RNA- and intronic MNRs (MNR_ensembl) is also included.

NAR Database Issue 2010
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tagsamino acid sequence base sequence computational biology dna repair genetic databases humans immune system microsatellite instability microsatellite repeats molecular sequence data mutation neoplasms nucleic acid databases

TACTTool Content

http://jbirc.jbic.or.jp/tact/

DNA > Annotations
DNA > Gene Prediction
DNA > Structure and Sequence Feature Detection
Human Genome > Annotations
Protein > Domains and Motifs
Sequence Comparison > Similarity Searching

Transcriptome Auto-annotation Conducting Tool (TACT) is an automated tool for conducting functional annotation of transcripts that integrates sequence similarity searches and functional motif predictions. TACT was originally developed as an automatic annotation pipeline for the Human Full-length cDNA Annotation Invitational (H-Inv) project.

NAR Web Server Issue 2006
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tagsalternative splicing amino acid motifs amino acid sequence base sequence complementary dna computational biology dna sequence analysis expressed sequence tags genes genetic databases genetic models genetic polymorphism genetic transcription human genome humans messenger rna microsatellite repeats molecular sequence data nucleic acid databases open reading frames protein databases proteins rna sequence analysis sequence analysis single nucleotide polymorphism systems integration tertiary protein structure