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Links tagged with 'membrane transport proteins'

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RbDeTool Content

http://icb.med.cornell.edu/crt/RbDe/index.xml

Protein > 2-D Structure Prediction
Protein > Presentation and Format

Residue-based Diagram editor (RbDe) constructs schematic diagrams of protein sequences to help observe the topology of secondary structure and transmembrane regions; free registration is required to use all features.

NAR Web Server Issue 2003
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tagsalgorithms amino acid sequence calmodulin connexins eye proteins factual databases humans membrane proteins membrane transport proteins molecular models molecular sequence data mutagenesis protein conformation protein folding proteins secondary protein structure src homology domains

RHYTHMTool Content

http://proteinformatics.charite.de/rhythm/

Protein > 3-D Structural Features
Protein > 3-D Structure Prediction
Protein > Localization and Targeting

RHYTHM predicts buried vs. exposed residues of helical membrane proteins. Users input either primary, secondary or tertiary structure information. Output includes secondary structure and topology information, and the contact type and conservation of each residue.

NAR Web Server Issue 2009
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tagsmembrane proteins membrane transport proteins molecular models reproducibility of results secondary protein structure tertiary protein structure

Sequence HarmonyTool Content

http://www.ibi.vu.nl/programs/seqharmwww/

Protein > Annotation and Function
Sequence Comparison > Analysis of Aligned Sequences

Sequence Harmony detects subfamily specific functional sites from a multiple sequence alignment by scoring compositional differences between given subfamily groupings.

NAR Web Server Issue 2007
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tagsalgorithms amino acid sequence amino acid sequence homology amino acids binding sites computational biology conserved sequence entropy membrane transport proteins molecular models molecular sequence data protein sequence analysis proteins ras proteins secondary protein structure sequence alignment smad proteins

SLITHERTool Content

http://bioinfo.mc.ntu.edu.tw/slither/

Protein > 3-D Structural Features
Protein > Biochemical Features
Protein > Molecular Dynamics and Docking

SLITHER is a web server for protein channel studies. It generates contiguous conformations of a molecule along a curved tunnel inside a protein and calculates the ensuing binding free energy profile.

NAR Web Server Issue 2009
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tagscatalytic domain glucose transporter type 1 humans ligands membrane transport proteins molecular models protein conformation