>
Tag
> Links tagged with 'mass spectrometry'

Links tagged with 'mass spectrometry'

RSS FeedCompact ViewList as XMLList as JSON

Found 21 links

Displaying 15 links

ARISTOTool Content

http://www.ionspectra.org/aristo

Other Molecules > Compounds
Other Molecules > Metabolites
Other Molecules > Small Molecules

Automatic Reduction of Ion Spectra to Ontology (ARISTO) is a web tool which provides information regarding the chemical nature/ontology of the compound underlying an input electron ionization mass spectrum.

NAR Web Server Issue 2011
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsmass spectrometry small molecule libraries

DeNovoIDDatabase Content

http://proteomics.mcw.edu/denovoid/

Protein > Proteomics

DeNovoID is a tool for protein identification using de novo peptide sequence data from mass spectrometry experiments.

NAR Web Server Issue 2005
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms amino acids mass spectrometry peptides protein databases protein sequence analysis proteomics

HUPO Proteomics Standards InitiativeResource Content

http://psidev.sourceforge.net/

Protein > Proteomics

HUPO Proteomics Standards Initiative (PSI) provides data representation standards to facilitate the exchange, comparison and validation of proteomics data.

downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsbiochemistry database management systems guidelines as topic humans internationality mass spectrometry natural language processing peptide mapping protein binding protein databases protein interaction mapping proteins proteomics reference standards

ISOTOPICATool Content

http://coco.protein.osaka-u.ac.jp/isotopica/

Protein > Proteomics

Tools developed to aid in the identification of mass spectrum that allow the calculation of mass values with isotopic distributions based on molecular formulas, peptides/proteins, DNA/RNA, carbohydrate sequences or combinations thereof. A viewer for visualizing results is also available.

NAR Web Server Issue 2004
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsamino acid sequence base sequence biopolymers carbohydrate sequence ions isotopes mass spectrometry mathematical computing peptide mapping

ISPIDER CentralTool Content

http://www.ispider.manchester.ac.uk/cgi-bin/ProteomicSearch.pl

Protein > Proteomics

The ISPIDER Central provides a range of services for integrative data analysis in mass spectrometry-based proteomics. It enables users to query multiple proteomic repositories and to add information to proteins retrieved from searches for integrative in silico experiments in proteomics.

NAR Web Server Issue 2008
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsmass spectrometry protein databases proteomics systems integration
setsUniversity of Manchester

MASCOT (Matrix Science)Tool Content

http://www.matrixscience.com/

Protein > Biochemical Features
Protein > Proteomics

Protein identification by peptide mass; excellent documentation; incorporates code from MOWSE but allows more search methods on more sequence databases.

downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsamino acid sequence amino acids factual databases mass spectrometry molecular sequence data molecular weight nucleic acids probability protein biosynthesis proteins

MassNetTool Content

http://massnet.kr

Protein > Do-it-all Tools for Protein
Protein > Proteomics

MassNet web server provides comprehensive functional annotation of mass spectrometry data. Annotation includes physico-chemical analysis, KEGG pathway assignment, GO mapping, and protein-protein interaction prediction.

NAR Web Server Issue 2008
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsmass spectrometry protein databases protein interaction mapping proteins

MassTRIXTool Content

http://masstrix.org

Other Molecules > Metabolites
Protein > Proteomics

With applications in metabolomics and other mass spectrometry studies, MassTRIX is a hypothesis driven approach to the annotation of mass spectrometry data. Data is output in context on a KEGG pathway map.

NAR Web Server Issue 2008
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsgene expression mass spectrometry metabolic networks and pathways

massXpertTool Content

http://www.massxpert.org

Protein > Proteomics

massXpert is a proteomics-oriented program mainly concerned with protein physico-chemistry and protein/peptide mass spectra simulations.

downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsdata display mass spectrometry protein conformation proteome

MaXIC-QTool Content

http://ms.iis.sinica.edu.tw/MaXIC-Q

Protein > Proteomics

The MaXIC-Q web server performs various quantification analyses on large-scale datasets generated from proteomics studies using isotope labeling. For input MS data, output is given in projected ion mass spectrum and extracted ion chromatograph which can be used to generate other calculations (e.g. ion abundances and peptide-protein ratios.

NAR Web Server Issue 2009
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagscomputational biology endothelial cells isotope labeling liquid chromatography mass spectrometry nitric acid peptides proteins reproducibility of results statistical data interpretation

MetaboAnalystTool Content

http://www.metaboanalyst.ca

Other Molecules > Metabolites
Protein > Interactions, Pathways, Enzymes
Protein > Proteomics

MetaboAnalyst is a web-based pipeline for metabolomic data processing, statistical analysis and functional interpretation. It performs data processing and normalization for various metabolomic data types. It provides various univariate and multivariate statistical analysis for two/multi-group, one/two-factor, as well time-series data. For targeted metabolomic data, users can also perform functional enrichment analysis and pathway analysis.

This content is being maintained by Jeff Xia.

NAR Web Server Issue 2009
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsbiomolecular nuclear magnetic resonance cluster analysis mass spectrometry metabolomics

MODiTool Content

http://prix.uos.ac.kr/research.jsp

Protein > Biochemical Features
Protein > Proteomics

Modi is a tool that facilitates the interpretation of tandem mass spectra in order to identify post-translational modifications (PTMs) in a peptide.

NAR Web Server Issue 2006
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsmass spectrometry peptides post-translational protein processing protein databases protein sequence analysis

Multi-QTool Content

http://ms.iis.sinica.edu.tw/Multi-Q-Web/

Protein > Proteomics

Multi-Q provides an automated data analysis tool for multiplexed protein quantitation based on iTRAQ labeling.

NAR Web Server Issue 2007
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsautomatic data processing computational biology humans ions jurkat cells liquid chromatography mass spectrometry multiprotein complexes peptides protein folding proteins proteomics

NeuropredTool Content

http://neuroproteomics.scs.uiuc.edu/neuropred.html

Protein > Proteomics
Protein > Sequence Features

NeuroPred is a tool designed to predict cleavage sites at basic amino acid locations in neuropeptide precursor sequences. Neuropred also computes the mass of the predicted peptides with or without selected post-translational modifications.

NAR Web Server Issue 2006
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsamino acid sequence animals aplysia invertebrate hormones logistic models mass spectrometry neuropeptides protein precursors protein sequence analysis regression analysis sensitivity and specificity statistical models

PANDORATool Content

http://www.pandora.cs.huji.ac.il

DNA > Annotations
Protein > Annotation and Function
Protein > Proteomics

The PANDORA web server integrates annotations for the biological analysis of sets of genes, proteins or peptides.

NAR Web Server Issue 2010
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsanimals humans mass spectrometry mice peptides protein databases proteins proteomics rats statistical data interpretation systems integration