>
Tag
> Links tagged with 'major histocompatibility complex'

Links tagged with 'major histocompatibility complex'

RSS FeedCompact ViewList as XMLList as JSON

Found 6 links

Displaying 6 links

Allele frequency netDatabase Content

http://www.allelefrequencies.net

Human Genome > Databases

The allele frequency net database is an online repository that contains information on the frequencies of immune genes and their corresponding alleles in different populations. At present, the system contains data on the frequency of genes from different polymorphic regions such as human leukocyte antigens, killer-cell immunoglobulin-like receptors, major histocompatibility complex Class I chain-related genes and a number of cytokine gene polymorphisms.

NAR Database Issue 2011
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagscytokines gene frequency genotype haplotypes histocompatibility antigens class i humans kir receptors major histocompatibility complex nucleic acid databases

IMGT/3DstructureDatabase Content

http://www.imgt.org/3Dstructure-DB/

Protein > Databases

IMGT/3Dstructure-DB is the three-dimensional (3D) structure database of IMGT, the international ImMunoGenetics information system for immunogenetics and immunoinformatics. IMGT/3Dstructure-DB contains 3D structures of immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility complex (MHC) proteins, antigen receptor/antigen complexes (IG/Ag, TR/peptide/MHC) of vertebrates; 3D structures of related proteins of the immune system (RPI) of vertebrates and invertebrates, belonging to the immunoglobulin and MHC superfamilies (IgSF and MhcSF, respectively) and found in complexes with IG, TR or MHC. IMGT/3Dstructure-DB data are annotated according to the IMGT criteria, using IMGT/DomainGapAlign, and based on the IMGT-ONTOLOGY concepts and axioms. IMGT/3Dstructure-DB provides IMGT gene and allele identification (CLASSIFICATION), region and domain delimitations (DESCRIPTION), amino acid positions according to the IMGT unique numbering (NUMEROTATION) that are used in IMGT/3Dstructure-DB cards, results of contact analysis and renumbered flat files. In its Web version, the IMGT/DomainGapAlign tool analyses amino acid sequences, per domain.

NAR Database Issue 2010
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalleles amino acid sequence amino acid sequence homology animals antigen receptors computational biology genetic databases humans immunoglobulins major histocompatibility complex molecular sequence data protein databases tertiary protein structure

Immune Epitope DatabaseDatabase Content

http://tools.immuneepitope.org/

Human Genome > Databases
Protein > Databases

The Immune Epitope Database (IEDB) provides a catalog of experimentally characterized B and T cell epitopes, as well as data on Major Histocompatibility Complex (MHC) binding and MHC ligand elution experiments. The database represents the molecular structures recognized by adaptive immune receptors and the experimental contexts in which these molecules were determined to be immune epitopes. Epitopes recognized in humans, nonhuman primates, rodents, pigs, cats and all other tested species are included. Both positive and negative experimental results are captured. The database can be queried by epitope structure, source organism, MHC restriction, assay type or host organism, among other criteria.

NAR Database Issue 2010
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsanimals communicable diseases computational biology epitopes genetic databases humans immune system immunogenetics major histocompatibility complex peptides protein databases proteins

IsoFinderTool Content

http://isofinder.sourceforge.net/

DNA > Structure and Sequence Feature Detection

IsoFinder is a tool for the prediction of isochores for a user-supplied sequence.

This content is being maintained by oliver.

NAR Web Server Issue 2004
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms computational biology genomics isochores major histocompatibility complex

MODPROPEPTool Content

http://www.nii.res.in/~narendra/PROT_PEP_INTERACTION/index.html

Protein > 3-D Structure Prediction
Protein > Domains and Motifs

MODPROPEP is a server for structural modeling of protein kinases and MHC proteins in complex with their substrate peptides.

NAR Web Server Issue 2007
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms animals computational biology computer simulation humans major histocompatibility complex peptides protein conformation protein databases proteins x-ray crystallography

OptiTopeTool Content

http://www.epitoolkit.org/optitope

Human Genome > Health and Disease
Human Genome > Sequence Polymorphisms
Protein > Molecular Dynamics and Docking

OpiTope identifies the optimal set of peptides or epitopes for a vaccine given constraints such as MHC allele probabilities, peptide mutation rates and maximum number of selected peptides. Incorporated as part of the EpiToolKit.

NAR Web Server Issue 2009
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalleles epitopes humans major histocompatibility complex peptides subunit vaccines