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Links tagged with 'linkage disequilibrium'

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ICSNPathwayTool Content

http://icsnpathway.psych.ac.cn/

Human Genome > Genomics
Human Genome > Sequence Polymorphisms

ICSNPathway is a web tool for the identification of candidate causal SNPs and their corresponding candidate causal pathways from genome wide association studies. ISCNPathway integrates linkage disequilibrium analysis, functional SNP annotation and pathway based analysis to identify these SNPs and pathways.

NAR Web Server Issue 2011
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tagsgenome-wide association study humans linkage disequilibrium rheumatoid arthritis single nucleotide polymorphism

ISTECH SNPAnalyzerTool Content

http://snp.istech.info/istech/board/login_form.jsp

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

ISTECH SNPAnalyzer is a tool for the statistical analysis of SNP data that includes Hardy Weinberg equilibrium (HWE), haplotype estimation, linkage disequilibrium (LD), and QTL analyses. Registration required; some browser requirements and set-up necessary.

NAR Web Server Issue 2005
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tagsalgorithms dna sequence analysis gene frequency genetic predisposition to disease genotype haplotypes humans linkage disequilibrium phenotype quantitative trait loci single nucleotide polymorphism systems integration

ProspectrTool Content

http://www.genetics.med.ed.ac.uk/prospectr/

Human Genome > Health and Disease

Prospectr (PRiOrization by Sequence & Phylogenetic Extent of CandidaTe Regions) can be used to enrich lists of genes found at a suspected disease locus. Given a list of genes, Prospectr will return a ranked list ordered by the likelihood of involvement in disease.

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tagsalgorithms automation computational biology conserved sequence decision trees dna sequence analysis gene expression profiling genetic databases genetic linkage genetic models genetic polymorphism genetic predisposition to disease genetic testing genome human genome humans inborn genetic diseases linkage disequilibrium nucleic acid databases phenotype protein databases reproducibility of results research design roc curve statistical models time factors

PupaSuiteTool Content

http://pupasuite.bioinfo.cipf.es

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

PupaSuite is a SNP analysis tool that allows for the selection of relevant SNPs within a gene based on the characteristics of the SNP. PupaSuite also provides information about LD parameters (based on genotype data from HapMap) and identifies haplotype blocks and tag SNPs. PupaSuite was created to join PupaSNP & PupasView.

NAR Web Server Issue 2004NAR Web Server Issue 2006
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tagsalgorithms amino acid substitution binding sites genetic transcription genotype haplotypes humans linkage disequilibrium molecular evolution nucleic acid databases phenotype rna splicing single nucleotide polymorphism transcription factors

QuickSNPTool Content

http://bioinformoodics.jhmi.edu/quickSNP.pl

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

QuickSNP is a resource for the selection of tagSNPs in the human genome that includes a gene-centric selection module.

NAR Web Server Issue 2007
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tagsalgorithms animals automation chromosome mapping computational biology dna sequence analysis genetic databases genetic models genotype human genome humans linkage disequilibrium single nucleotide polymorphism