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Links tagged with 'information systems'

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ArrayExpressDatabase Content

http://www.ebi.ac.uk/arrayexpress/

Expression > Transcript Expression Analysis

Public repository for microarray based gene expression data; contains several curated gene expression datasets.

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tagsalgorithms animals computational biology data collection database management systems europe gene expression profiling genetic databases information dissemination information systems oligonucleotide array sequence analysis proteins software design

CIBEXDatabase Content

http://cibex.nig.ac.jp/

Expression > Transcript Expression Analysis

The Center for Information Biology gene EXpression database (CIBEX) is a public repository for gene expression experimental data. The database system is compliant with the MIAME standard.

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tagscomputational biology database management systems forecasting gene expression gene expression profiling genetic databases information systems oligonucleotide array sequence analysis software design

FASTA ProgramsTool Content

http://fasta.bioch.virginia.edu/

Sequence Comparison > Similarity Searching

Sequence retrieval and comparison tools.

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tagsadrenergic receptors algorithms amino acid sequence animals antigen receptors base sequence dna eye proteins gene library globins humans information systems molecular sequence data nucleic acid sequence homology peptides proteins rod opsins transforming growth factors

GenomeNetTool Content

http://www.genome.ad.jp/

DNA > Sequence Retrieval and Submission
Human Genome > Other Resources
Protein > Interactions, Pathways, Enzymes
Protein > Sequence Retrieval

Network of database and computational resources including KEGG (pathways, interactions, etc.) and DBGET/LinkDB (an integrated database retrieval system). It also hosts several web-based tools for sequence analysis (ie. Blast, Motif, Clustal W)

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tagsamino acid sequence animals biological models computer simulation factual databases genetic models genome humans information systems japan ligands molecular biology molecular sequence data protein binding proteome

NCBI GEODatabase Content

http://www.ncbi.nlm.nih.gov/geo/

Expression > Databases

The Gene Expression Omnibus (GEO) database stores over 20,000 microarray- and sequence-based functional genomics studies, and continues to handle the majority of direct high-throughput data submissions from the research community. Multiple mechanisms are provided to help users effectively search, browse, download and visualize the data at the level of individual genes or entire studies.

NAR Database Issue 2011
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tagsanimals computational biology database management systems forecasting gene expression profiling genetic databases genome genomics humans information systems national library of medicine (u.s.) oligonucleotide array sequence analysis software design united states
setsNational Center for Biotechnology Information (NCBI)

NetOGlyc Prediction ServerTool Content

http://www.cbs.dtu.dk/services/NetOGlyc/

Other Molecules > Carbohydrates
Protein > Domains and Motifs

Predicts mucin type GalNAc O-glycosylation sites in mammalian proteins.

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tagsalgorithms amino acid sequence animals binding sites carbohydrate conformation factual databases glycoproteins glycosylation hiv envelope protein gp120 humans information systems mammals membrane glycoproteins molecular sequence data mucins n-acetylgalactosaminyltransferases n-acetylglucosaminyltransferases neural networks (computer) protein conformation reproducibility of results secondary protein structure serine substrate specificity threonine viral envelope proteins

NJplotTool Content

http://pbil.univ-lyon1.fr/software/njplot.html

DNA > Phylogeny Reconstruction
Protein > Phylogeny Reconstruction

NJplot is a tool for visualizing binary trees such as the phylogenetic trees output from the PHYLIP programs. Available for several platforms including Windows, MacOS, Linux and Solaris.

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tagsamino acid sequence amino acid sequence homology base sequence information systems molecular sequence data phylogeny sequence alignment

XplorMedTool Content

http://www.ogic.ca/projects/xplormed/

Literature > Search Tools
Literature > Text Mining and Semantics

XplorMed is a tool that summarizes MEDLINE search results according to subjects and allows you to navigate through abstracts in an interactive fashion.

NAR Web Server Issue 2003
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tagsalgorithms artificial intelligence benchmarking bibliography of medicine fuzzy logic genetic databases information systems medline publications systems integration