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Links tagged with 'information services'

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ChilibotTool Content

http://www.chilibot.net/

Literature > Text Mining and Semantics

Chilibot searches the PubMed literature database based on specific relationships between proteins, genes, or keywords. The results are returned as a graph.

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tagsbiology information services natural language processing protein binding protein databases pubmed software design

CMRDatabase Content

http://cmr.tigr.org/tigr-scripts/CMR/CmrHomePage.cgi

Model Organisms > Microbes
Sequence Comparison > Comparative Genomics

The Comprehensive Microbial Resource (CMR) gives access to a central repository of the sequence and annotation of all complete public prokaryotic genomes as well as comparative genomics tools across all of the genomes in the database.

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tagsbacteria bacterial genes bacterial genome factual databases information services

DIPDatabase Content

http://dip.doe-mbi.ucla.edu/

Protein > Interactions, Pathways, Enzymes

The Database of Interacting Proteins (DIP) allows users to search for interacting proteins. Results lists can be searched and/or visualized (statically or dynamically). Users can submit new protein-protein interactions and update database entries.

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tagsanimals bacterial proteins computational biology factual databases forecasting fungal proteins helicobacter pylori humans information services macromolecular substances molecular models precipitin tests protein binding protein databases proteins reproducibility of results tertiary protein structure two-hybrid system techniques

InterProDatabase Content

http://www.ebi.ac.uk/interpro/index.html

Protein > Domains and Motifs

Integrated database of commonly used signature databases (e.g. PROSITE, PRINTS, SMART, Pfam, ProDom); text- and sequence-based searches.

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tagsalgorithms amino acid repetitive sequences animals computational biology factual databases humans information services metabolic networks and pathways post-translational protein processing protein databases protein sequence analysis proteins search engine sequence alignment systems integration tertiary protein structure

PubCrawlerTool Content

http://pubcrawler.gen.tcd.ie/

DNA > Sequence Retrieval and Submission
Literature > Search Tools
Protein > Sequence Retrieval
RNA > Sequence Retrieval

It goes to the library. You go to the pub; receive email alerts for current contents of PubMed and GenBank; e.g. use accession number of htg record as query to receive sequence updates (as the version number changes).

NAR Web Server Issue 2004
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tagselectronic mail information services medline national library of medicine (u.s.) nucleic acid databases pubmed united states

SeWeRTool Content

http://bioinformatics.org/sewer/

DNA > DNA and Genomic Analysis
Protein > Do-it-all Tools for Protein

Sequence analysis tools on the web; includes nucleic acid, protein, PCR and alignment tools.

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tagscomputational biology database management systems information services