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Links tagged with 'information dissemination'

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Found 13 links

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ArrayExpressDatabase Content

http://www.ebi.ac.uk/arrayexpress/

Expression > Transcript Expression Analysis

Public repository for microarray based gene expression data; contains several curated gene expression datasets.

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tagsalgorithms animals computational biology data collection database management systems europe gene expression profiling genetic databases information dissemination information systems oligonucleotide array sequence analysis proteins software design

BioconductorTool Content

http://www.bioconductor.org/

Computer Related > Bio-* Programming Tools
Computer Related > Math and Statistics
Expression > Transcript Expression Analysis

Bioconductor is an open source and open development software project that aims to provide access to a wide range of powerful statistical and graphical methods for the analysis of genomic data.

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tagsalgorithms biological models computational biology computer simulation database management systems dna probes dna sequence analysis gene expression profiling gene expression regulation information dissemination nucleic acid sequence homology oligonucleotide array sequence analysis reproducibility of results sequence alignment signal transduction transcription factors

BioDBcoreDatabase Content

http://biocurator.org/biodbcore.shtml

Computer Related > Databases

BioDBCore is a community-defined, uniform, generic description of the core attributes of biological databases.

This content is being maintained by pgaudet.

NAR Database Issue 2011
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tagsfactual databases information dissemination

BioExtractTool Content

http://www.bioextract.org

Computer Related > Web Services
Computer Related > Workflows
DNA > DNA and Genomic Analysis

The BioExtract Server is a platform for the creation of bioinformatic workflows to aid the analysis of genomic data. A series of recorded tasks can be saved and shared. Integrated resources include NCBI databases, EMBL-Bank, UniProt and UniRef, as well as a large number of computational tools such as EMBOSS and KEGG.

NAR Web Server Issue 2011
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tagsbiopolymers computational biology data mining database management systems factual databases genetic databases genomics information dissemination systems integration workflow

BioPaxResource Content

http://www.biopax.org/

Computer Related > Bio-* Programming Tools

The BioPAX web site provides information about a collaborative effort to create a data exchange format for biological pathways.

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tagscomputational biology information dissemination metabolic networks and pathways programming languages signal transduction

EMBRACE Web ServiceResource Content

http://www.embraceregistry.net

Computer Related > Web Services

European Model for Bioinformatics Research and Community Education (EMBRACE) web service consists of EDAM, an ontology for describing life sciences; BioXSD, a schema for exchanging data between services and a centralized registry of ~1000 services.

NAR Web Server Issue 2010
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tagsbiological science disciplines computational biology information dissemination registries systems integration

GPSDBDatabase Content

http://biomint.pharmadm.com/

Literature > Search Tools
Literature > Text Mining and Semantics

Gene and Protein Synonym DataBase (GPSDB) is a collection of gene and protein names, organized by species that can be used to search for a given gene/protein name, retrieve all synonyms for this entity, and query Medline with a set of user-selected terms.

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tagscontrolled vocabulary database management systems documentation information dissemination medline natural language processing protein databases proteins terminology as topic

myExperimentResource Content

http://www.myexperiment.org

Computer Related > Workflows

myExperiment is an online research environment that supports the social sharing of bioinformatics workflows.

This content is being maintained by dder.

NAR Web Server Issue 2010
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tagscommunity networks computational biology information dissemination reproducibility of results

NCBI Assembly ArchiveTool Content

http://www.ncbi.nlm.nih.gov/projects/assembly/

Model Organisms > General Resources

The NCBI Assembly Archive links publically available assembly information with the NCBI Trace Archive\'s raw sequence data.

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tagsbiomedical research bioterrorism genetic databases genome information dissemination national institutes of health (u.s.) national library of medicine (u.s.) research support as topic single nucleotide polymorphism united states
setsNational Center for Biotechnology Information (NCBI)

Pathway CommonsDatabase Content

http://www.pathwaycommons.org

Model Organisms > Databases
Protein > Interactions, Pathways, Enzymes

Pathway Commons is a collection of publicly available pathway data from multiple organisms. Pathway Commons provides a web-based interface that enables biologists to browse and search a comprehensive collection of pathways from multiple sources represented in a common language, a download site that provides integrated bulk sets of pathway information in standard or convenient formats and a web service that software developers can use to conveniently query and access all data.

This content is being maintained by baderg.

NAR Database Issue 2011
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tagsbiological models computational biology disease factual databases genetic databases genomics information dissemination interaction networks metabolic networks and pathways pathways programming languages protein databases signal transduction systems integration
setsUniversity of Toronto

PEDRoTool Content

http://pedrodownload.man.ac.uk/

Protein > Proteomics

Software and schemata for modelling, capturing and disseminating proteomics experimental data

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tagsdatabase management systems documentation genetic databases information dissemination molecular models natural language processing programming languages protein conformation protein databases protein sequence analysis proteins proteomics software design

PhenomicDBDatabase Content

http://www.phenomicdb.de/

Model Organisms > General Resources
Protein > Annotation and Function
Sequence Comparison > Comparative Genomics

PhenomicDB integrates the genotype and phenotype information of several organisms from public data sources. The mapping of phenotypic data fields allows cross-species phenotype comparison.

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tagsanimals documentation gene expression profiling genetic databases genomics genotype humans information dissemination phenotype species specificity

Proteios - The Open Source Proteomics InitiativeTool Content

http://www.proteios.org/

Protein > Proteomics

Proteios is an initiative to create an open-source storage, analysis and organization system for proteomics experiments.

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tagsdatabase management systems documentation electrophoresis information dissemination liquid chromatography mass spectrometry molecular models protein array analysis protein conformation protein databases protein sequence analysis proteins proteomics software design statistical data interpretation