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Links tagged with 'hydrogen-ion concentration'

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GELBANKDatabase Content

http://gelbank.anl.gov/

Expression > Protein Expression
Protein > Protein Expression
Protein > Proteomics

GELBANK is a database of 2D gel images of proteomes for species with completed genomes. The user can search by sequence description or fragment, or by gel characteristics. Links are made between the sequence and gel when available.

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tagsfactual databases gel electrophoresis genome humans hydrogen-ion concentration molecular weight proteome proteomics research design

H++Tool Content

http://biophysics.cs.vt.edu/H++

Protein > 3-D Structural Features
Protein > Biochemical Features

H++ is a tool for the prediction of protonation states and pK of ionizable groups in macromolecular structures.

This content is being maintained by onufriev.

NAR Web Server Issue 2005
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tagsAMBER hydrogen hydrogen-ion concentration molecular dynamics Molecular modeling pK protonation

PCETool Content

http://bioserv.rpbs.jussieu.fr/Help/PCE.html

Protein > Biochemical Features

PCE (Protein Continuum Electrostatics) is an interface to electrostatic potentials and pKa calculations using the MEAD package.

NAR Web Server Issue 2005
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tagshydrogen-ion concentration molecular models muramidase proteins static electricity

PFPTool Content

http://pfp.technion.ac.il/

Protein > 3-D Structural Features
Protein > Interactions, Pathways, Enzymes

PFP (Patch Finder Plus) is a tool for extracting and displaying positive electrostatic patches on protein surfaces which can be indicative of nucleic acid binding interfaces.

This content is being maintained by shulash3.

NAR Web Server Issue 2007
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tagsalgorithms amino acid motifs amino acid sequence binding sites computational biology dna-binding proteins hydrogen bonding hydrogen-ion concentration molecular conformation molecular models molecular sequence data neural networks (computer) plant proteins programming languages protein binding protein conformation protein databases proteins static electricity surface properties viral proteins

PHEMTOTool Content

http://phemto.orgchm.bas.bg/

Protein > 3-D Structural Features
Protein > Biochemical Features

Protein pH-dependent Electric Moment Tools (PHEMTO) is a web server for evaluating protein electrostatic characteristics relative to their molecular interactions. Input is the atomic coordinate file in PDB format; output is electric/dipole moments and interactive visualization as well as the full electrostatic characteristics.

NAR Web Server Issue 2009
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tagsalgorithms hydrogen-ion concentration proteins static electricity

PHEPSTool Content

http://pheps.orgchm.bas.bg/home.html

Protein > 3-D Structural Features
Protein > Biochemical Features

pH-dependent Protein Electrostatics Server (PHEPS) performs global and local pH-dependent electrostatic analysis of protein structures. The user can supply a PDB ID or upload a coordinate file.

NAR Web Server Issue 2006
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tagshydrogen-ion concentration ions proteins protons static electricity