>
Tag
> Links tagged with 'horizontal gene transfer'

Links tagged with 'horizontal gene transfer'

RSS FeedCompact ViewList as XMLList as JSON

Found 5 links

Displaying 5 links

BROPResource Content

http://brop.org/

Expression > Transcript Expression Analysis
Model Organisms > Microbes

The Bioinformatics Resource for Oral Pathogens (BROP) contains tools for genomics of oral pathogens including Genome Viewer, GOAL (genome wide ORF alignment), an oral pathogen microarray database, an entrez counter, oral pathogen specific BLAST, and a codon usage database.

NAR Web Server Issue 2005
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsbacteria bacterial capsules bacterial genes bacterial genome bacterial polysaccharides bacterial proteins biological evolution computational biology dna transposable elements fungal genome genetic databases genetic variation genomic islands genomics horizontal gene transfer integrases mouth oligonucleotide array sequence analysis open reading frames operon porphyromonas gingivalis sequence alignment streptococcus mutans transfer rna virulence virulence factors

IslandPathTool Content

http://www.pathogenomics.sfu.ca/islandpath/

DNA > Annotations
DNA > Structure and Sequence Feature Detection
Model Organisms > Microbes

IslandPath aids genomic island detection in prokaryotic genome seqeunces, using features such as dinucleotide bias, G+C, location of tRNA genes, annotations of mobility genes, etc. Genomic islands are defined here as genomic regions of potential horizontal origin.

downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsarchaea archaeal genome bacteria bacterial genome cpg islands database management systems dna sequence analysis horizontal gene transfer phylogeny sequence alignment

iTOLTool Content

http://itol.embl.de

Protein > Phylogeny Reconstruction

The Interactive Tree of Life (iTOL) tool is useful for the display, manipulation and annotation of phylogenetic trees. In addition to standart tree viewer functions, it offers powerful annotation of phylogenetic trees with various additional datasets. Annotated trees can be exported into various graphical formats. An user account system is provided, offering easy tree management and sharing through workspaces and projects. Programmatic access is also available.

This content is being maintained by iletunic.

NAR Web Server Issue 2011
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms animals chromosome mapping computational biology data display decision trees genetic databases horizontal gene transfer humans molecular evolution molecular sequence annotation phylogeny species specificity visualization

PhEVERDatabase Content

http://pbil.univ-lyon1.fr/databases/phever

Model Organisms > Databases

The PhEVER database provides accurate evolutionary and phylogenetic information to analyse the nature of virus-virus and virus-host lateral gene transfers. It is a database of homologous families both (i) between sequences from different viruses and (ii) between viral sequences and sequences from cellular organisms. It offers a clustering of proteins into homologous families containing at least one viral sequences, as well as alignments and phylogenies for each of these families.

This content is being maintained by Leonor Palmeira.

NAR Database Issue 2011
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagscluster analysis genetic databases genomics horizontal gene transfer host-pathogen interactions molecular evolution phylogeny sequence homology viral genes viral genome viral proteins viruses

TFAMTool Content

http://tfam.lcb.uu.se/

RNA > Functional RNAs

TFAM is a system to classify the function of tRNAs that is based on tRNA structural alignments.

NAR Web Server Issue 2007
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalphaproteobacteria animals bacterial dna bacterial genome computational biology drosophila melanogaster genetic variation genomics histidine-trna ligase horizontal gene transfer molecular evolution nucleic acid databases phylogeny statistical models transfer rna