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Links tagged with 'hla antigens'

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IMGT/HLA databaseDatabase Content

http://www.ebi.ac.uk/imgt/hla/

Human Genome > Databases

The IMGT/HLA database provides a searchable repository of highly curated HLA sequences. The naming of these HLA genes and alleles and their quality control is the responsibility of the WHO Nomenclature Committee for Factors of the HLA System. Through the work of the HLA Informatics Group and in collaboration with the European Bioinformatics Institute, we are able to provide public access to this data.

NAR Database Issue 2011
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tagsalleles hla antigens humans protein databases terminology as topic

NetMHC-3.0Tool Content

http://www.cbs.dtu.dk/services/NetMHC

Human Genome > Health and Disease
Protein > Molecular Dynamics and Docking

NetNHC-3.0 is a web server for the prediction of human, mouse or monkey MHC Class I-peptide binding. Predictions are made for peptides of 8-11 amino acid length using artificial neural networks and weight matrices.

NAR Web Server Issue 2008
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tagsalleles animals epitopes haplorhini histocompatibility antigens class i hla antigens humans mice peptides

SBT Interface - dbMHCTool Content

http://www.ncbi.nlm.nih.gov/gv/mhc/sbt.cgi?cmd=main

DNA > Sequence Polymorphisms
Human Genome > Other Resources
Human Genome > Sequence Polymorphisms
Protein > Interactions, Pathways, Enzymes

The SBT (Sequencing-based typing) interface is a tool accompanying the NCBI's Major Histocompatibility Complex database (dbMHC). It identifies the allelic composition of sequence-based typing (SBT) results of cDNA or genomic sequences. Samples are compared with databases containing all known alleles for several human leukocyte antigen (HLA) and killer cell immunoglobulin-like receptors (KIR) loci. An interactive sequence viewer allows inspection of the alignments.

NAR Web Server Issue 2004
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tagsalgorithms alleles dna fingerprinting dna sequence analysis genetic polymorphism hla antigens immunologic receptors kir receptors nucleic acid databases sequence alignment
setsNational Center for Biotechnology Information (NCBI)

SVMHCTool Content

http://www-abi.informatik.uni-tuebingen.de/Services/SVMHC/

DNA > Sequence Polymorphisms
Human Genome > Other Resources
Human Genome > Sequence Polymorphisms
Protein > Interactions, Pathways, Enzymes

SVMHC is a server for prediction of MHC class I and class II binding peptides. SVMHC can be used to find likely binders in a protein sequence and to investigate the effects of single nucleotide polymorphisms on MHC-peptide binding.

NAR Web Server Issue 2006
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tagsalleles animals artificial intelligence computational biology histocompatibility antigens histocompatibility antigens class i hla antigens humans mice peptides predictive value of tests protein binding protein databases protein sequence analysis sensitivity and specificity single nucleotide polymorphism t-lymphocyte epitopes