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Links tagged with 'histocompatibility antigens class i'

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Allele frequency netDatabase Content

http://www.allelefrequencies.net

Human Genome > Databases

The allele frequency net database is an online repository that contains information on the frequencies of immune genes and their corresponding alleles in different populations. At present, the system contains data on the frequency of genes from different polymorphic regions such as human leukocyte antigens, killer-cell immunoglobulin-like receptors, major histocompatibility complex Class I chain-related genes and a number of cytokine gene polymorphisms.

NAR Database Issue 2011
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tagscytokines gene frequency genotype haplotypes histocompatibility antigens class i humans kir receptors major histocompatibility complex nucleic acid databases

IEDB-ARTool Content

http://tools.immuneepitope.org

Human Genome > Health and Disease
Protein > Do-it-all Tools for Protein

The Immune Epitope Database Analysis Resource (IEDB-AR) is a collection of tools for the prediction and analysis of immune epitopes. Tools include B-cell and T-cell epitope prediction and epitope analysis tools.

NAR Web Server Issue 2008
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tagsb-lymphocyte epitopes factual databases histocompatibility antigens class i histocompatibility antigens class ii peptides proteins t-lymphocyte epitopes

MetaMHCTool Content

http://www.biokdd.fudan.edu.cn/Service/MetaMHC.html

Human Genome > Annotations
Protein > Domains and Motifs
Protein > Localization and Targeting

MetaMHC integrates the outputs of leading MHC binding predictors. MHC class I and II peptides binding are predicted.

This content is being maintained by Xihao Hu.

NAR Web Server Issue 2010
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tagsanimals binding sites histocompatibility antigens class i histocompatibility antigens class ii humans mice peptides

NetMHC-3.0Tool Content

http://www.cbs.dtu.dk/services/NetMHC

Human Genome > Health and Disease
Protein > Molecular Dynamics and Docking

NetNHC-3.0 is a web server for the prediction of human, mouse or monkey MHC Class I-peptide binding. Predictions are made for peptides of 8-11 amino acid length using artificial neural networks and weight matrices.

NAR Web Server Issue 2008
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tagsalleles animals epitopes haplorhini histocompatibility antigens class i hla antigens humans mice peptides

PAComplexTool Content

http://PAcomplex.life.nctu.edu.tw

Protein > Interactions, Pathways, Enzymes

PAComplex is a web server for inferring peptide antigen families and binding models from T-cell receptor-peptide MHC complexes.

NAR Web Server Issue 2011
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tagsantigen receptors histocompatibility antigens class i molecular models mycoplasma pneumonia peptides pol gene products ribosomal proteins

PcleavageTool Content

http://www.imtech.res.in/raghava/pcleavage/

Protein > Sequence Features

Pcleavage is a tool that uses a support vector machine to predict immunoproteasome and constitutive proteasome cleavage sites in antigenic sequences.

This content is being maintained by raghavagps.

NAR Web Server Issue 2005
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tagsantigens artificial intelligence histocompatibility antigens class i ligands proteasome endopeptidase complex protein sequence analysis proteins

SVMHCTool Content

http://www-abi.informatik.uni-tuebingen.de/Services/SVMHC/

DNA > Sequence Polymorphisms
Human Genome > Other Resources
Human Genome > Sequence Polymorphisms
Protein > Interactions, Pathways, Enzymes

SVMHC is a server for prediction of MHC class I and class II binding peptides. SVMHC can be used to find likely binders in a protein sequence and to investigate the effects of single nucleotide polymorphisms on MHC-peptide binding.

NAR Web Server Issue 2006
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tagsalleles animals artificial intelligence computational biology histocompatibility antigens histocompatibility antigens class i hla antigens humans mice peptides predictive value of tests protein binding protein databases protein sequence analysis sensitivity and specificity single nucleotide polymorphism t-lymphocyte epitopes