mirTools allows users to comprehensively characterize the small RNA transcriptome from high-throughput sequencing data. Users can filter quality reads, align short reads to the reference genome, classify small RNA candidates into known miRNAs, non-coding RNA, genomic repeats, etc. among other analysis tools.
WebPrInSeS is a web server that allows automated full-length clone sequence identification and verification using high-throughput sequencing data from any of the 3 major sequencing platforms.