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Links tagged with 'genetic techniques'

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GalaxyTool Content

http://galaxyproject.org/

Computer Related > Workflows
DNA > DNA and Genomic Analysis

Galaxy is an open, web-based platform for performing accessible, reproducible, and transparent biomedical research. Complete computational analyses can be built, saved, rerun, modified and shared. Galaxy is available as a free public web server; as open-source software that can be installed and customized to address specific needs; as a virtual machine that can be installed on the cloud; and on many specialized public web servers at user sites.

This content is being maintained by galaxyproject.

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tagsalgorithms animals base sequence chromosome mapping cluster analysis computational biology data integration dna dna mutational analysis dna sequence analysis factual databases genetic databases genetic techniques genome genomics human genome humans molecular sequence data nucleic acid databases sequence alignment software design workflow

GeneFizzTool Content

http://pbga.pasteur.fr/GeneFizz/

DNA > Gene Prediction

GeneFizz is a tool for identifying genes using by using the physical characteristics of helix-to-coil transitions in DNA.

NAR Web Server Issue 2003
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tagsalgorithms animals biophysical phenomena biophysics computational biology dna dna sequence analysis drosophila melanogaster genes genetic code genetic models genetic techniques genomics molecular evolution nucleic acid conformation plasmodium falciparum protozoan dna protozoan genes protozoan genome

GENSCANTool Content

http://genes.mit.edu/GENSCAN.html

DNA > Gene Prediction

Identification of complete gene structures in genomic DNA.

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tagsanimals dna dna sequence analysis exons genes genetic models genetic promoter regions genetic techniques genetic transcription human genome humans introns markov chains molecular sequence data nucleic acid repetitive sequences probability protein biosynthesis proteins rna splicing vertebrates

GlimmerTool Content

http://cbcb.umd.edu/software/glimmer/

DNA > Gene Prediction

Gene Locator and Interpolated Markov Modeler; this prokaryote-gene finding tool is the primary microbial gene finder used at TIGR; free (including source code) with registration for non-commercial use.

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tagsalgorithms animals artifacts bacterial dna bacterial genes bacterial genome base sequence chromosome mapping decapodiformes dna sequence analysis genetic models genetic techniques haemophilus influenzae helicobacter pylori markov chains open reading frames prochloron reproducibility of results sensitivity and specificity sequence alignment symbiosis

PhylemonTool Content

http://phylemon.bioinfo.cipf.es

DNA > Phylogeny Reconstruction
Protein > Phylogeny Reconstruction
Sequence Comparison > Multiple Sequence Alignments

Phylemon is a server that integrates a suite of tools for multiple sequence alignment, phylogeny, and evolutionary tests from the most popular stand-alone phylogenetic and evolutionary analysis programs. Phylemon 2.0 has an integrated environment to allow for evolutionary analyses, format conversion, file storage and editing capacity, and has saved phylogenetic pipeline function.

NAR Web Server Issue 2007NAR Web Server Issue 2011
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tagsanimals computational biology dna sequence analysis genetic databases genetic techniques humans molecular evolution phylogeny programming languages protein sequence analysis sequence alignment statistical models

PolyBayesTool Content

http://bioinformatics.bc.edu/marthlab/PolyBayes

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

UNIX-based SNP discovery from redundant sequences; integrated with Phred/Phrap/Consed infrastructure (see DNA -- Contig Assembly); free for non-commercial use.

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tagsalgorithms alleles bayes theorem expressed sequence tags genetic techniques genetic variation human genome humans sequence alignment single nucleotide polymorphism statistical data interpretation

Primer ZTool Content

http://genepipe.ngc.sinica.edu.tw/primerz/beginDesign.do

DNA > Tools For the Bench
Human Genome > Sequence Polymorphisms
Model Organisms > Mouse and Rat

Primer Z is an interface for PCR primer design for human, mouse, or rat genes and human SNPs; uses Primer3 primer design program.

NAR Web Server Issue 2007
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tagsalgorithms automation computational biology dna primers exons genetic databases genetic promoter regions genetic techniques humans messenger rna polymerase chain reaction single nucleotide polymorphism

Primer3PlusTool Content

http://www.bioinformatics.nl/cgi-bin/primer3plus/primer3plus.cgi

DNA > Tools For the Bench

Primer3Plus is an enhanced web interface to the popular Primer3 PCR primer design program.

NAR Web Server Issue 2007
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tagsbase sequence computational biology database management systems dna primers genetic techniques molecular cloning molecular sequence data nucleic acid sequence homology polymerase chain reaction

SAGE Home PageTool Content

http://www.sagenet.org/

Expression > cDNA, EST, SAGE

Serial Analysis of Gene Expression; simultaneous expression and map information.

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tagsbase sequence complementary dna dna restriction enzymes gene expression gene library genetic techniques humans messenger rna molecular cloning molecular sequence data pancreas polymerase chain reaction

ViralORFeomeDatabase Content

http://www.viralorfeome.com/

Model Organisms > Databases

ViralORFeome 1.0 is a database and management system that provides an integrated set of bioinformatic tools to clone viral ORFs in the Gateway(R) system. ViralORFeome provides a convenient interface to navigate through virus genome sequences, to design ORF-specific cloning primers, to validate the sequence of generated constructs and to browse established collections of virus ORFs. ViralORFeome has been designed to manage all possible variants or mutants of a given ORF so that the cloning procedure can be applied to any emerging virus strain. A subset of plasmid constructs generated with ViralORFeome platform has been tested with success for heterologous protein expression in different expression systems at proteome scale.

NAR Database Issue 2010
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tagscomputational biology genetic databases genetic techniques molecular cloning nucleic acid databases open reading frames protein databases tertiary protein structure viral genes viral genome