>
Tag
> Links tagged with 'genetic recombination'

Links tagged with 'genetic recombination'

RSS FeedCompact ViewList as XMLList as JSON

Found 8 links

Displaying 8 links

Genotyping - NCBITool Content

http://www.ncbi.nih.gov/projects/genotyping/formpage.cgi

Model Organisms > Other Organisms
Sequence Comparison > Other Alignment Tools

The Genotyping tool at the NCBI identifies the genotype (or subtype) of viral sequences by using a sliding window approach to BLAST analysis against reference sequences for different viral subtypes. Results are shown as a graphical output plotting the top-scoring genotype. An alignment tool is also available.

NAR Web Server Issue 2004
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms dna sequence analysis genetic recombination genotype hepacivirus hepatitis b virus hiv-1 molecular sequence data sequence alignment viral dna viral genes viral genome viruses
setsNational Center for Biotechnology Information (NCBI)

Influenza Virus ResourcesResource Content

http://www.ncbi.nlm.nih.gov/genomes/FLU/FLU.html

Model Organisms > Other Organisms

Influenza Virus Resource presents data obtained from the NIAID Influenza Genome Sequencing Project as well as from GenBank, combined with tools for flu sequence analysis and annotation. In addition, it provides links to other resources that contain flu sequences, publications and general information about flu viruses.

downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsanimals genetic recombination genetic variation genome h3n2 subtype influenza a virus human influenza humans influenza a virus influenza vaccines influenza virus hemagglutinin glycoproteins molecular evolution mutagenesis mutation neuraminidase new york phylogeny public sector reassortant viruses sequence analysis time factors viral genes viral genome virus replication

jpHMMTool Content

http://jphmm.gobics.de/

Model Organisms > Microbes
Model Organisms > Other Organisms

Jumping Profile Hidden Markov Model (jpHMM) takes a HIV-1 genome sequence and uses a pre-calculated multiple alignment of the major HIV-1 subtypes to predict the phylogenetic breakpoints and HIV subtype of the submitted sequence.

This content is being maintained by akschultz.

NAR Web Server Issue 2006NAR Web Server Issue 2009
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms amino acid sequence homology base sequence dna breaks genetic recombination genomics hiv-1 markov chains phylogeny proteins reproducibility of results sequence alignment tertiary protein structure viral genome

RF_DYMHCTool Content

http://www.bioinf.seu.edu.cn/Recombination/rf_dymhc.htm

DNA > Structure and Sequence Feature Detection
Model Organisms > Yeast

RF_DYMHC (Random Forest-Based System for Detecting Yeast Meiotic Recombination Hotspots and Coldspots) predicts recombination hot/cold spots in the yeast genome.

NAR Web Server Issue 2007
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms artificial intelligence automated pattern recognition chromosome mapping codon computational biology dna sequence analysis fungal genome genetic recombination meiosis nucleotides saccharomyces cerevisiae

RSSsiteTool Content

http://www.itb.cnr.it/rss

DNA > Structure and Sequence Feature Detection
Human Genome > Annotations
Model Organisms > Mouse and Rat

RSSsite consists of a reference database and prediction tool for the identification of cryptic recombination signal sequences (RSSs) in the human and mouse genomes.

NAR Web Server Issue 2010
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms animals b-lymphocyte gene rearrangement genetic recombination genome genomics human genome humans mice nucleic acid databases nucleic acid regulatory sequences t-lymphocyte gene rearrangement

SeLOXTool Content

http://selox.mpi-cbg.de/cgi-bin/selox/index

DNA > Structure and Sequence Feature Detection

SeLOX web server identifies degenerate lox-like sites within genomic sequences.

This content is being maintained by vineeth.

NAR Web Server Issue 2010
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsbinding sites directed molecular evolution genetic recombination genomics hiv long terminal repeat human genome humans integrases inverted repeat sequences recombinases

SPRINGTool Content

http://algorithm.cs.nthu.edu.tw/tools/SPRING

DNA > Phylogeny Reconstruction
Sequence Comparison > Comparative Genomics

Sorting Permutation by Reversals and Block Interchanges (SPRING) is a tool for the analysis of genome rearrangements. SPRING takes two or more chromosomes as its input and then computes a minimum series of reversals and/or block-interchanges for transforming one chromosome into another. Phylogenetic trees based on the rearrangement analysis are also shown as part of the results.

NAR Web Server Issue 2006
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsalgorithms bacterial chromosomes bacterial genome chromosome inversion chromosome mapping chromosomes dna sequence analysis gammaproteobacteria gene order gene rearrangement genetic models genetic recombination genomics molecular evolution nucleic acid sequence homology phylogeny sequence alignment vibrio

Virus Genotyping ToolsTool Content

http://bioafrica.mrc.ac.za/rega-genotype/html/

DNA > Phylogeny Reconstruction
Model Organisms > Microbes

This web server facilitates high-throughput virus genotyping by aligning query sequences to a pre-defined set of reference strains and then computing phylogenetic analysis.

NAR Web Server Issue 2009
downloadDownload as XMLDownload as JSON
user feedback
0
No votes yet
tagsbase sequence genetic recombination genetic variation genotype hepacivirus hepatitis b virus hiv-1 phylogeny reference standards sequence alignment sequence analysis viruses