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Links tagged with 'genetic predisposition to disease'

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Found 14 links

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ArrayXPathTool Content

http://www.snubi.org/software/ArrayXPath/

Expression > Transcript Expression Analysis
Protein > Interactions, Pathways, Enzymes

ArrayXPath is a web-based service for matching microarray gene-expression profiles with known biological pathways. Input is a clustered gene-expression profile in a tab-delimited text format. Output includes pathway diagrams.

NAR Web Server Issue 2004NAR Web Server Issue 2005
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tagscluster analysis gene expression profiling genetic databases genetic predisposition to disease medical subject headings oligonucleotide array sequence analysis signal transduction statistical data interpretation systems integration

CADgeneDatabase Content

http://www.bioguo.org/CADgene/

DNA > Databases

The CADgene, a comprehensive manually curated database for coronary artery disease genes. Candidate genes are classified into 12 functional categories based on their roles in CAD. Each gene includes detailed information from related studies (e.g. the size of case-control, population, SNP, odds ratio, P-value, etc.) and useful annotations, which include general gene information, Gene Ontology annotations, KEGG pathways, protein-protein interactions and others.

NAR Database Issue 2011
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tagscoronary artery disease genetic databases genetic predisposition to disease humans single nucleotide polymorphism

CanPredictTool Content

http://www.cgl.ucsf.edu/Research/genentech/canpredict/

Human Genome > Health and Disease
Human Genome > Sequence Polymorphisms
Protein > Sequence Features

CanPredict uses a combination of computational methods to predict whether specific sequence changes in a protein are likely to be cancer-associated mutations.

NAR Web Server Issue 2007
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tagsalgorithms alleles amino acids computational biology expressed sequence tags genetic predisposition to disease humans missense mutation neoplasm dna neoplasms single nucleotide polymorphism tumor cell line

ENDEAVOURTool Content

http://www.esat.kuleuven.be/endeavour

Expression > Networks
Expression > Protein Expression
Expression > Transcript Expression Analysis
Expression > cDNA, EST, SAGE

ENDEAVOUR is a computational approach to prioritize candidate genes for further study. Users input training genes already known to be involved in the process under study and the candidate genes to prioritize. The web server supports multiple species and integrates multiple genomic data to generate the final prioritization. ENDEAVOUR has been benchmarked in silico and experimentally validated leading to the discovery of novel disease genes in several genetic diseases.

This content is being maintained by ltranche.

NAR Web Server Issue 2008
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tagsalgorithms animal models animals caenorhabditis elegans cell differentiation chromosome mapping computational biology drosophila melanogaster gene expression regulation genes genetic models genetic predisposition to disease humans mice rats roc curve sensitivity and specificity statistical models zebrafish

FastSNPTool Content

http://fastsnp.ibms.sinica.edu.tw

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

Function Analysis and Selection Tool for Single Nucleotide Polymorphisms (FastSNP) allows users to identify and prioritize SNPs that are likely to have functional effects.

This content is being maintained by fastsnp.

NAR Web Server Issue 2006
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tagsgene frequency genetic predisposition to disease phenotype proteins risk single nucleotide polymorphism

G2DTool Content

http://www.ogic.ca/projects/g2d_2/

Human Genome > Health and Disease

G2D (Candidate Genes to Inherited Diseases) scans a human genomic region for genes related to an inherited disease. The G2D server also presents precomputed candidate genes for more than 600 genetically inherited diseases that have been mapped onto chromosomal regions without assignment of a particular gene.

NAR Web Server Issue 2007
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tagsalgorithms alzheimer disease asthma chromosome mapping computational biology genes genetic databases genetic linkage genetic markers genetic predisposition to disease human genome humans inborn genetic diseases mathematics medline obesity phenotype type 2 diabetes mellitus

GeneSeekerTool Content

http://www.cmbi.ru.nl/GeneSeeker/

Human Genome > Health and Disease

GeneSeeker allows you to generate a list of candidate genes related to a human genetic disorder by searching against localization and expression databases.

NAR Web Server Issue 2005
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tagschromosome mapping gene expression genetic databases genetic predisposition to disease humans inborn genetic diseases phenotype syndrome systems integration

ISTECH SNPAnalyzerTool Content

http://snp.istech.info/istech/board/login_form.jsp

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

ISTECH SNPAnalyzer is a tool for the statistical analysis of SNP data that includes Hardy Weinberg equilibrium (HWE), haplotype estimation, linkage disequilibrium (LD), and QTL analyses. Registration required; some browser requirements and set-up necessary.

NAR Web Server Issue 2005
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tagsalgorithms dna sequence analysis gene frequency genetic predisposition to disease genotype haplotypes humans linkage disequilibrium phenotype quantitative trait loci single nucleotide polymorphism systems integration

MutDBDatabase Content

http://www.mutdb.org/

DNA > Annotations
DNA > Sequence Polymorphisms

MutDB is a database that associates protein structural information with mutations and polymorphisms in gene sequences. The data is derived from dbSNP and Swiss-Prot, and can be browsed by gene name or searched by keyword or by various identifiers.

NAR Web Server Issue 2005
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tagsamino acid substitution database management systems documentation genetic databases genetic predisposition to disease genetic variation human genome humans molecular models mutation phenotype protein conformation protein databases protein sequence analysis proteins sequence alignment single nucleotide polymorphism structure-activity relationship

nsSNPAnalyzerTool Content

http://snpanalyzer.uthsc.edu/

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

nsSNPAnalyzer is a tool to predict whether a nonsynonymous single nucleotide polymorphism (nsSNP) is phenotypically neutral or disease associated.

NAR Web Server Issue 2005
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tagsalgorithms artificial intelligence computational biology genetic predisposition to disease humans phenotype protein conformation protein sequence analysis sequence alignment single nucleotide polymorphism

ProspectrTool Content

http://www.genetics.med.ed.ac.uk/prospectr/

Human Genome > Health and Disease

Prospectr (PRiOrization by Sequence & Phylogenetic Extent of CandidaTe Regions) can be used to enrich lists of genes found at a suspected disease locus. Given a list of genes, Prospectr will return a ranked list ordered by the likelihood of involvement in disease.

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tagsalgorithms automation computational biology conserved sequence decision trees dna sequence analysis gene expression profiling genetic databases genetic linkage genetic models genetic polymorphism genetic predisposition to disease genetic testing genome human genome humans inborn genetic diseases linkage disequilibrium nucleic acid databases phenotype protein databases reproducibility of results research design roc curve statistical models time factors

SatellogDatabase Content

http://satellog.bcgsc.ca/

DNA > Structure and Sequence Feature Detection
Human Genome > Health and Disease

Satellog is a database for the identification and prioritization of satellite repeats in disease association studies.

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tags3' untranslated regions base sequence biomedical research cluster analysis computational biology dna sequence analysis genetic databases genetic polymorphism genetic predisposition to disease human genome humans huntington disease inborn genetic diseases microsatellite repeats nucleic acid databases schizophrenia sequence alignment trinucleotide repeat expansion trinucleotide repeats untranslated regions

SNPinfoTool Content

http://www.niehs.nih.gov/snpinfo

DNA > Sequence Polymorphisms
Expression > Gene Regulation
Expression > Splicing
Protein > 3-D Structure Prediction
RNA > Functional RNAs

A suite of web=based tools for SNP detection. Functional predictions of SNP affect on protein structure, gene regulation, splicing and miRNA binding are incorporated.

NAR Web Server Issue 2009
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tagsbinding sites genes genetic linkage genetic predisposition to disease genome genome-wide association study humans male micrornas prostatic neoplasms reproducibility of results rna splice sites single nucleotide polymorphism systems integration transcription factors

T1DBaseDatabase Content

http://www.t1dbase.org

Human Genome > Databases

T1DBase is a database for type 1 diabetes (T1D). It integrates genetic, genomic and expression data relevant to T1D research across mouse, rat and human and presents this to the user as a set of web pages and tools. New data sets include curated summary data from four genome-wide association studies relevant to T1D, HaemAtlas-a data set and tool to query gene expression levels in haematopoietic cells and a manually curated table of human T1D susceptibility loci, incorporating genetic overlap with other related diseases.

NAR Database Issue 2011
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tagsanimals gene expression genetic databases genetic predisposition to disease genome-wide association study hematopoietic stem cells humans mice rats type 1 diabetes mellitus