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Links tagged with 'genetic enhancer elements'

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DiRETool Content

http://dire.dcode.org

Expression > Gene Regulation

A web server for predicting distant (outside of proximal promoter regions) regulatory elements (DiRE) in higher eukaryotic genomces using gene co-expression data, comparative genomics as well as transcription factor binding site information. DiRE allows users to start analysis with raw microarray expression data.

NAR Web Server Issue 2008
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tagsanimals binding sites gene expression profiling gene expression regulation genetic enhancer elements genetic promoter regions genomics humans transcription factors transcriptional regulatory elements

ESEfinderTool Content

http://rulai.cshl.edu/tools/ESE/

Expression > Splicing

ESEfinder is a web-based resource for identifing putative ESEs (exonic splicing enhancers), cis-acting motifs responsible for enhancing splicing.

NAR Web Server Issue 2003
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tagsbase sequence consensus sequence exons genetic enhancer elements humans messenger rna point mutation rna precursors rna sequence analysis rna splicing rna-binding proteins

REDflyDatabase Content

http://redfly.ccr.buffalo.edu/?content=/search.php

Expression > Gene Regulation
Model Organisms > Fly

Regulatory Element Database for Drosophila (REDfly) is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs). REDfly seeks to include all experimentally verified fly CRMs along with their DNA sequence, their associated genes, and the expression patterns they direct.

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tagsanimals binding sites drosophila melanogaster drosophila proteins genetic databases genetic enhancer elements genomics online systems synteny systems integration transcription factors transcriptional regulatory elements

REDflyDatabase Content

http://redfly.ccr.buffalo.edu

Model Organisms > Databases

The REDfly database of Drosophila transcriptional cis-regulatory elements provides experimentally validated cis-regulatory modules and transcription factor binding sites. The user interface is designed for access by both causal and power users and is intended as a tool for facilitating computational as well as experimental studies of transcriptional regulation.

This content is being maintained by halfon.

NAR Database Issue 2011
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tagsanimals binding sites drosophila melanogaster drosophila proteins genetic databases genetic enhancer elements genomics online systems synteny systems integration transcription factors transcriptional regulatory elements