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Links tagged with 'genetic code'

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Cluster BusterTool Content

http://zlab.bu.edu/cluster-buster/

DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation

Cluster Buster is a tool that finds clusters of pre-specified motifs in DNA sequences.

NAR Web Server Issue 2003
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tagsbinding sites cluster analysis dna sequence analysis genetic code humans nucleic acid regulatory sequences transcription factors

CodonOTool Content

http://digbio.missouri.edu/software/index.html

DNA > Structure and Sequence Feature Detection
Model Organisms > General Resources

CodonO is a method for measuring synonymous codon usage bias within and across genomes.

NAR Web Server Issue 2007
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tagsarchaeal dna archaeal genome bacterial dna bacterial genome base composition codon computational biology computer simulation gc rich sequence genetic code genetic models genome species specificity

CPCTool Content

http://cpc.cbi.pku.edu.cn/programs/run_cpc.jsp

DNA > Gene Prediction
DNA > Structure and Sequence Feature Detection
RNA > Functional RNAs

CPC (Coding Potential Calculator) distinguishes protein-coding from non-coding RNAs based on the sequence features of the input transcripts.

NAR Web Server Issue 2007
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tagsanimals computational biology expressed sequence tags genetic code genetic transcription genetic variation genetic vectors messenger rna mice molecular sequence data nucleic acid databases protein biosynthesis proteins reproducibility of results rna

GeneFizzTool Content

http://pbga.pasteur.fr/GeneFizz/

DNA > Gene Prediction

GeneFizz is a tool for identifying genes using by using the physical characteristics of helix-to-coil transitions in DNA.

NAR Web Server Issue 2003
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tagsalgorithms animals biophysical phenomena biophysics computational biology dna dna sequence analysis drosophila melanogaster genes genetic code genetic models genetic techniques genomics molecular evolution nucleic acid conformation plasmodium falciparum protozoan dna protozoan genes protozoan genome

GenoCADTool Content

http://www.genocad.org

DNA > Tools For the Bench
Expression > Networks
Expression > Protein Expression

GenoCAD is a web-based application for designing protein expression vectors, artificial gene networks and other genetic constructs composed of multiple functional blocks. Users can download the designed sequence for synthesis or further analysis. Users can also create personal accounts and thus can customize their workspace.

This content is being maintained by peccoud.

NAR Web Server Issue 2009
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external linksLink on Twitter
tagsbase sequence chromosome mapping computer simulation dna gene database genetic code genetic engineering genetic models genomic islands nucleic acid databases reference standards synthetic genes

TranslatorXTool Content

http://translatorx.co.uk

Sequence Comparison > Alignment Editing and Visualization
Sequence Comparison > Multiple Sequence Alignments

TranslatorX is a web-server designed to align protein coding nucleotide sequences based on their corresponding amino acid translations rather than nucleotide alignments.

This content is being maintained by fabascal.

NAR Web Server Issue 2010
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tagsdna sequence analysis genetic code phylogeny protein biosynthesis protein sequence analysis sequence alignment