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Links tagged with 'fungal dna'

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Candida Genome DatabaseDatabase Content

http://www.candidagenome.org/

Model Organisms > Databases

The Candida Genome Database provides online access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. Two tools have been added to the DB. The Biochemical Pathways tool provides visualization of metabolic pathways and analysis tools that facilitate interpretation of experimental data, including results of large-scale experiments, in the context of Candida metabolism. Textpresso for Candida allows searching through the full-text of Candida-specific literature, including clinical and epidemiological studies.

NAR Database Issue 2010
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tagscandida albicans computational biology fungal dna fungal genes fungal genome genetic databases nucleic acid databases open reading frames protein databases tertiary protein structure

Interolog/Regulog DatabaseDatabase Content

http://interolog.gersteinlab.org/

Model Organisms > Fly
Model Organisms > Plants
Model Organisms > Worm
Model Organisms > Yeast
Protein > Interactions, Pathways, Enzymes

Database of protein orthologs that interact (interologs) and proteins with conserved regulatory relationships across species (regulogs). Contains data for C. elegans, Drosophila, Arabidopsis, and Yeast.

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tagsamino acid sequence amino acid sequence homology animals bacterial dna bacterial genome bacterial proteins binding sites caenorhabditis elegans caenorhabditis elegans proteins computational biology conserved sequence dna dna-binding proteins drosophila melanogaster drosophila proteins fungal dna fungal genome genome helicobacter pylori helminth dna protein binding protein databases protein interaction mapping proteins saccharomyces cerevisiae saccharomyces cerevisiae proteins

NIASGBdbDatabase Content

http://www.gene.affrc.go.jp/databases_en.php

Model Organisms > Databases

The National Institute of Agrobiological Sciences Genebank Project database (NIASGBdb) consists of a genetic resource database and a plant diseases database, linked by a web retrieval database. The genetic resources database has plant and microorganism search systems to provide information on research materials, including passport and evaluation data for genetic resources with the desired properties. A database of plant diseases in Japan has been developed based on the listing of common names of plant diseases compiled by the Phytopathological Society of Japan. Relevant plant and microorganism genetic resources are associated with the plant disease names.

NAR Database Issue 2011
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tagsagricultural crops fungal dna fusarium genetic databases genetic markers genetic variation plant diseases

S. pombe genomeDatabase Content

http://www.sanger.ac.uk/Projects/S_pombe/

Model Organisms > Yeast

Schizosaccharomyces pombe Genome Sequencing Project.

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tagsbase sequence centromere chromosome mapping dna sequence analysis eukaryotic cells fungal chromosomes fungal dna fungal genome fungal proteins gene duplication humans inborn genetic diseases introns schizosaccharomyces tertiary protein structure

SGDDatabase Content

http://www.yeastgenome.org/

Model Organisms > Databases

The Saccharomyces Genome Database (SGD) is a scientific database for the molecular biology and genetics of the yeast Saccharomyces cerevisiae. The information in SGD includes functional annotations, mapping and sequence information, protein domains and structure, expression data, mutant phenotypes, physical and genetic interactions and the primary literature from which these data are derived. Phenotypes and genetic interaction data are also annotated and displayed in SGD.

This content is being maintained by yeastgenome.

NAR Database Issue 2010
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tagscomputational biology fungal dna fungal genes fungal genome genetic databases mutation nucleic acid databases phenotype protein databases saccharomyces cerevisiae tertiary protein structure

The GRID - General Repository for Interaction DatasetsDatabase Content

http://www.thebiogrid.org/

Model Organisms > Fly
Model Organisms > Yeast
Protein > Interactions, Pathways, Enzymes

Database of genetic and physical interactions; contains interaction data from several genome/proteome wide-studies, the MIPS database, and BIND; provides a powerful visualization system for looking at interactions graphically.

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tagsdatabase management systems fungal dna fungal genes genetic databases nucleic acid databases protein databases saccharomyces cerevisiae saccharomyces cerevisiae proteins

WEB-THERMODYNTool Content

http://www.gsa.buffalo.edu/dna/dk/WEBTHERMODYN/

DNA > Structure and Sequence Feature Detection

WEB-THERMODYN analyzes DNA sequences and computes the DNA helical stability. This tool can be used to predict sites of low helical stability present at regulatory regions for transcription and replication.

NAR Web Server Issue 2003
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tagsdeoxyribonucleases dna dna replication dna sequence analysis fungal chromosomes fungal dna mutation nucleic acid conformation nucleic acid denaturation nucleic acid regulatory sequences plasmids replication origin replicon saccharomyces cerevisiae thermodynamics