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Links tagged with 'false positive reactions'

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IntActDatabase Content

http://www.ebi.ac.uk/intact/

Protein > Databases

IntAct is molecular interaction database and toolkit. Data is abstracted from the literature or from direct data depositions by expert curators following a deep annotation model providing a high level of detail. The search interface allows the user to iteratively develop complex queries, exploiting the detailed annotation with hierarchical controlled vocabularies. Results are provided at any stage in a simplified, tabular view.

NAR Database Issue 2010
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tagsanimals computational biology controlled vocabulary false positive reactions genetic databases humans programming languages protein databases protein interaction mapping proteins tertiary protein structure

miPredTool Content

http://www.bioinf.seu.edu.cn/miRNA/

RNA > Functional RNAs

miPred (microRNA Predictor) can distinguish between real and pseudo microRNA precursors.

NAR Web Server Issue 2007
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tagsanimals base sequence computational biology computer simulation false positive reactions genome genomics humans messenger rna micrornas molecular sequence data nucleic acid conformation species specificity

RTAnalyzerTool Content

http://www.riboclub.org/cgi-bin/RTAnalyzer/index.pl?page=rt_find

DNA > Annotations
DNA > Structure and Sequence Feature Detection

RTAnalyzer is an application to find new retroposons and detect L1 retroposition signatures.

NAR Web Server Issue 2007
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tagsalgorithms computational biology database management systems dna sequence analysis false positive reactions genetic models long interspersed nucleotide elements nucleic acid databases retroelements sequence alignment terminal repeat sequences

Servers at University College LondonTool Content

http://bioinf.cs.ucl.ac.uk/web_servers/

Protein > 2-D Structure Prediction
Protein > 3-D Structural Features
Protein > 3-D Structure Prediction
Protein > Domains and Motifs
Protein > Localization and Targeting

A suite of tools that includes: PSIPRED, a protein structure prediction server; GenTHREADER, for genomic protein fold recognition; MEMSAT2, for transmembrane protein structure prediction; GTD, the genomic threading database; DISOPRED, a dynamic disorder prediction server; DomPred, a domain prediction server; and COPS, for the comparison of protein structure classifications. UCL web portal has been updated to include a fully automated 3-D modeling pipeline, BioSerf.

NAR Web Server Issue 2005NAR Web Server Issue 2010
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tagsalgorithms amino acid sequence amino acid sequence homology animals bacterial genome computational biology database management systems documentation factual databases false positive reactions fungal genome gene expression profiling genetic databases genome genomics humans london mathematics membrane proteins molecular evolution molecular models molecular sequence data neural networks (computer) open reading frames peptide fragments polypyrimidine tract-binding protein probability protein conformation protein databases protein folding protein sequence analysis proteins proteome proteomics reproducibility of results secondary protein structure sensitivity and specificity sequence alignment sequence analysis sequence homology structural models tertiary protein structure theoretical models

SIFTTool Content

http://blocks.fhcrc.org/sift/SIFT.html

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms
Protein > Annotation and Function

Sorting Intolerant From Tolerant (SIFT) is a sequence homology-based tool that will predict whether an amino acid substitution will affect protein function.

NAR Web Server Issue 2003
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tagsamino acid motifs amino acid sequence amino acid substitution bacterial proteins bacteriophage t4 chromosome mapping computational biology conserved sequence dna sequence analysis escherichia coli proteins false positive reactions genes genetic polymorphism hiv protease hiv-1 humans inborn genetic diseases lac repressors lactose missense mutation molecular sequence data muramidase mutation phenotype probability protein databases protein sequence analysis proteins pseudogenes repressor proteins sequence alignment single nucleotide polymorphism