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Links tagged with 'environmental pollutants'

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PathPredTool Content

http://www.genome.jp/tools/pathpred/

Protein > Interactions, Pathways, Enzymes

PathPred is an enzyme catalyzed metabolic pathway prediction server. Beginning with a query compound and chemical logic of enzymatic reactions (chemical structure transformation patterns of small molecules), biodegradation pathways of environmental compounds and biosynthesis pathways of secondary metabolites are predicted.

NAR Web Server Issue 2010
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tagsbiocatalysis biosynthetic pathways environmental pollutants enzymes metabolic networks and pathways

UM-BBDDatabase Content

http://umbbd.msi.umn.edu/

Protein > Databases

The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on compounds, enzymes, reactions and microorganism entries. It includes a Biochemical Periodic Table (UM-BPT) and a rule-based Pathway Prediction System (UM-PPS) that predicts plausible pathways for microbial degradation of organic compounds. UM-BBD compound data are contributed to PubChem and ChemSpider, the public chemical databases.

This content is being maintained by lynda.

NAR Database Issue 2010
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tagsbacterial genome biochemistry biotransformation chemical dictionaries computational biology environmental biodegradation environmental pollutants genetic databases microbiology nucleic acid databases

UM-PPSTool Content

http://umbbd.msi.umn.edu/predict/

Model Organisms > Microbes
Other Molecules > Compounds
Protein > Interactions, Pathways, Enzymes

The University of Minnesota Pathway Prediction System (UM-PPS) is a web tool that recognizes functional groups in organic compounds that are potential targets of microbial catabolic reactions and predicts transformations of these groups based on biotransformation rules. Multi-level predictions are made.

This content is being maintained by lynda.

NAR Web Server Issue 2008NAR Web Server Issue 2011
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tagsbiotransformation environmental pollutants factual databases