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Links tagged with 'dna methylation'

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BiQ Analyzer HTTool Content

http://biq-analyzer-ht.bioinf.mpi-inf.mpg.de/

DNA > DNA and Genomic Analysis

BiQ Analyzer HT Is a tool that supports locus specific analysis and visualization of high-throughput bisulfite sequencing data. It facilitates analysis of locus specific DNA methylation patterns.

NAR Web Server Issue 2011
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tagsdna dna methylation dna sequence analysis genetic loci high-throughput nucleotide sequencing polymerase chain reaction sequence alignment sulfites

HHMDDatabase Content

http://bioinfo.hrbmu.edu.cn/hhmd

Protein > Databases

Human Histone Modification Database (HHMD) focuses on the storage and integration of histone modification datasets that were obtained from laboratory experiments. HHMD incorporates 43 location-specific histone modifications in human. HHMD can be searched by histone modification, gene ID, functional categories, chromosome location and cancer name. HHMD also includes a user-friendly visualization tool named HisModView, by which genome-wide histone modification map can be shown.

NAR Database Issue 2010
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tagsalgorithms chromatin chromatin immunoprecipitation computational biology dna methylation gene expression profiling genetic databases histones humans protein databases

NEBcutterTool Content

http://tools.neb.com/NEBcutter/index.php3

DNA > Tools For the Bench

NEBcutter finds non-overlapping open reading frames and sites for all enzymes that cut the sequence just once; max length is 100 kb.

NAR Web Server Issue 2003
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tagsdna methylation dna restriction enzymes dna sequence analysis plasmids restriction mapping substrate specificity type ii site-specific deoxyribonucleases

NGSmethDBDatabase Content

http://bioinfo2.ugr.es/NGSmethDB/gbrowse/

DNA > Databases

NGSmethDB contains methylation data derived from next-generation sequencing (NGS). Two cytosine methylation contexts (CpG and CAG/CTG) are considered. Through a browser interface, the user can search for methylation states in a set of tissues, retrieve methylation values for a set of tissues in a given chromosomal region, or display the methylation of promoters among different tissues. NGSmethDB is currently populated with human, mouse and Arabidopsis data.

NAR Database Issue 2011
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tagsanimals chromosomes cpg islands cytosine data mining dna methylation dna sequence analysis genetic promoter regions genomics humans mice nucleic acid databases

QUMATool Content

http://quma.cdb.riken.jp/

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms

Quantification tool for Methylation Analysis (QUMA) is a web-based bisulfite sequencing analysis tool for CpG methylation analysis. Following user input of PCR target genomic sequence and raw bisulfite sequences, alignment, visualization and quantification of the bisulfite sequence data is rapid. Users can also control the quality of aligned sequences by changing cutoff paramteres.

NAR Web Server Issue 2008
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tagscpg islands dna methylation dna sequence analysis statistical data interpretation sulfites