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Links tagged with 'dna copy number variations'

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CaSNPDatabase Content

http://cistrome.dfci.harvard.edu/CaSNP/

Expression > Databases

CaSNP database for storing and interrogating quantitative copy number alterations (CNA) data from SNP arrays on 34 different cancer types in 104 studies. With a user input of region or gene of interest, CaSNP will return the CNA information summarizing the frequencies of gain/loss and averaged copy number for each study, and provide links to download the data or visualize it in UCSC Genome Browser. CaSNP also displays the heatmap showing copy numbers estimated at each SNP marker around the query region across all studies for a more comprehensive visualization.

NAR Database Issue 2011
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tagsdna copy number variations human genome humans neoplasms nucleic acid databases oligonucleotide array sequence analysis single nucleotide polymorphism

Pancreatic Expression databaseDatabase Content

http://www.pancreasexpression.org

Expression > Databases

The Pancreatic Expression database (PED) is a repository for pancreatic-derived -omics data. It includes easurements derived from transcriptomics, proteomics, genomics and miRNA profiles from various pancreas-centred reports on a broad range of specimen and experimental types.

NAR Database Issue 2011
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tagsanimals computational biology database management systems dna copy number variations gene expression gene expression profiling genetic databases genomics humans micrornas neoplastic gene expression regulation pancreas pancreatic neoplasms proteomics search engine

UCSC Cancer Genomics BrowserDatabase Content

https://genome-cancer.ucsc.edu

Human Genome > Genomics
Human Genome > Health and Disease

The UCSC Cancer Genomics Browser comprises a suite of web-based tools to integrate, visualize and analyze cancer genomics and clinical data. The browser displays whole-genome views of genome-wide experimental measurements for multiple samples alongside their associated clinical information. Multiple data sets can be viewed simultaneously as coordinated 'heatmap tracks' to compare across studies or different data modalities. Users can order, filter, aggregate, classify and display data interactively based on any given feature set including clinical features, annotated biological pathways and user-contributed collections of genes. Integrated standard statistical tools provide dynamic quantitative analysis within all available data sets. Many new features have been added, including the hgMicroscope tumor image viewer, hgSignature for real-time genomic signature evaluation on any browser track, and 'PARADIGM' pathway tracks to display integrative pathway activities.

This content is being maintained by jzhu.

NAR Database Issue 2011
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tagsdna copy number variations gene expression genetic databases genomics human genome humans neoplasms

waviCGHTool Content

http://wavi.bioinfo.cnio.es

DNA > Sequence Polymorphisms
Human Genome > Sequence Polymorphisms
Model Organisms > Mouse and Rat

waviCGH is a web server for the analysis and comparison of genomic copy number alterations in multiple same species samples. For human, mouse and rat genomes, results are mapped back onto the genome.

NAR Web Server Issue 2010
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tagsanimals comparative genomic hybridization dna copy number variations genomics humans mice oligonucleotide array sequence analysis rats