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Links tagged with 'dictionaries as topic'

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AcromineTool Content

http://www.nactem.ac.uk/software/acromine/

Literature > Text Mining and Semantics

Acromine is an tool that finds full forms of acronyms that appear in MEDLINE.

This content is being maintained by pthompson.

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tagsalgorithms automatic acronym expansion bibliographic databases cluster analysis computational biology dictionaries as topic medline natural language processing polymerase chain reaction reproducibility of results statistical models x-ray computed tomography
setsUniversity of Manchester

Acromine DisambiguatorTool Content

http://www.nactem.ac.uk/software/acromine_disambiguation/

Literature > Text Mining and Semantics

Given a biomedical text, Acromine Disambiguator correctly predicts expanded full forms of acronoyms appearing in the text. As acronyms appearing in biomedical texts are often ambiguous, such a disambiguation process is important to ensure the correct interpretation of the text.

This content is being maintained by pthompson.

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tagsalgorithms automatic acronym disambiguation automatic acronym expansion bibliographic databases cluster analysis computational biology dictionaries as topic medline natural language processing polymerase chain reaction reproducibility of results statistical models x-ray computed tomography
setsUniversity of Manchester

MSEATool Content

http://www.msea.ca

Other Molecules > Metabolites
Protein > Interactions, Pathways, Enzymes

Metabolite Set Enrichment Analysis (MSEA) performs enrichment analyses for (primarily human) metabolomic studies. It identifies patterns of metabolite concentration changes in a biologically meaningful context. MSEA uses a library of ~6300 predefined metabolite sets from pathways, disease signatures, genetic traits, and cellular/tissue locations. MSEA also facilitates conversion between metabolite common names, synonyms and other database identifies.

This content is being maintained by Jeff Xia.

NAR Web Server Issue 2010
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tagsanimals dictionaries as topic factual databases humans mammals metabolomics

RCSB Protein Data BankDatabase Content

http://www.pdb.org

Protein > 3-D Structure Retrieval/Viewing
Protein > Databases
Protein > Sequence Data

The PDB archive contains information about experimentally-determined structures of proteins, nucleic acids, and complex assemblies. The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function.

NAR Database Issue 2011
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tagsanimals data collection dictionaries as topic genomics humans ligands mice protein conformation protein databases proteins systems integration

The BRENDA Tissue Ontology (BTO)Database Content

http://www.BTO.brenda-enzymes.org

Other Molecules > Databases

BTO, the BRENDA Tissue Ontology is a structured encyclopedia of tissue terms. BTO contains different anatomical structures, tissues, cell types and cell lines, classified under generic categories corresponding to the rules and formats of the Gene Ontology Consortium and organized as a directed acyclic graph (DAG). Most of the terms are endowed with comments on their derivation or definitions. Four different types of relationships between the terms are implemented. A versatile web interface with several search and navigation functionalities allows convenient online access to the BTO and to the enzymes isolated from the tissues.

This content is being maintained by Dietmar Schomburg.

NAR Database Issue 2011
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tagscell line cells controlled vocabulary dictionaries as topic enzymes factual databases systems integration