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Links tagged with 'developmental gene expression regulation'

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BIOBASE Gene Regulation databasesDatabase Content

http://www.gene-regulation.com/pub/databases.html

Protein > Interactions, Pathways, Enzymes

includes: TRANSFAC - transcription factor database; Patho DB - mutated forms of transcription factors and binding sites that are pathologically relevant; S/MARt DB - scaffold matrix transaction database; TRANSPATH - gene regulatory pathway database.

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tagsanimals binding sites chromatin chromosomes database management systems developmental gene expression regulation dna-binding proteins eukaryotic cells forecasting gene expression profiling gene expression regulation genetic databases genetic promoter regions genetic transcription humans macromolecular substances mice nuclear matrix nuclear proteins nucleic acid databases oligonucleotide array sequence analysis protein databases saccharomyces signal transduction systems integration tissue distribution transcription factors

EMAGEDatabase Content

http://www.emouseatlas.org/emage/

Expression > Databases
Model Organisms > Databases

EMAGE is a freely available online database of in situ gene expression patterns in the developing mouse embryo. Gene expression domains from raw images are extracted and integrated spatially into a set of standard 3D virtual mouse embryos at different stages of development, which allows data interrogation by spatial methods. An anatomy ontology is also used to describe sites of expression, which allows data to be queried using text-based methods. Data coverage has been increased by sourcing from a greater selection of journals.

NAR Database Issue 2010
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tagsanimals automation computational biology database management systems developmental gene expression regulation embryonic development factual databases gene expression gene expression profiling genetic databases mammalian embryo mice molecular imaging nucleic acid databases programming languages

TRANSFACDatabase Content

http://www.gene-regulation.com/pub/databases.html#transfac

DNA > Structure and Sequence Feature Detection
Expression > Gene Regulation

Transcription Factor Database of eukaryotic cis-acting regulatory DNA elements and trans-acting factors; free for non-commercial use.

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tagsanimals arabidopsis arabidopsis proteins binding sites database management systems developmental gene expression regulation dna dna-binding proteins drosophila melanogaster drosophila proteins eukaryotic cells factual databases gene expression profiling gene expression regulation genetic databases genetic promoter regions genetic transcription humans mice nucleic acid regulatory sequences rats saccharomyces systems integration tertiary protein structure tissue distribution transcription factors